View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_53 (Length: 240)
Name: NF17837_low_53
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 38121386 - 38121163
Alignment:
| Q |
1 |
ctcttacaaggctataattcttggcttttcacatacggctattacgtgtgaatgaatttctagatcaaacacttatcggatgttgtacctactactgaag |
100 |
Q |
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| T |
38121386 |
ctcttacaaggctataattcttggcttttcacatatggctattacgtgtgaatgaatttctagatcaaacacttatcggacgttgtacctactactgaag |
38121287 |
T |
|
| Q |
101 |
ctggagataaatttctaagtatgttgcctccttggcatgcatatgaaagagcttgcgagtatttagttttctcacgtggtcttgaacatatatacactac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121286 |
ctggagataaatttctaagtatgttgcctccttggcatgcatatgaaagagcttgcgagtatttagttttctcacgtggtcttgaacatatatacactac |
38121187 |
T |
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| Q |
201 |
tgtaagaaacttgaaggtattatt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
38121186 |
tgtaagaaacttgaaggtattatt |
38121163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 95 - 224
Target Start/End: Complemental strand, 38133277 - 38133148
Alignment:
| Q |
95 |
ctgaagctggagataaatttctaagtatgttgcctccttggcatgcatatgaaagagcttgcgagtatttagttttctcacgtggtcttgaacatatata |
194 |
Q |
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|||||| ||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| ||| | ||| |||| || |||| |
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| T |
38133277 |
ctgaagttggggatagatttctaagtatgctgcctccttggcatgcatatgaaagagcttgtgagtatttcattttttcatgcggtgttgaccaagtata |
38133178 |
T |
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| Q |
195 |
cactactgtaagaaacttgaaggtattatt |
224 |
Q |
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| T |
38133177 |
tacaactgtgagaaacttgaaggtattatt |
38133148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 35108147 - 35108213
Alignment:
| Q |
95 |
ctgaagctggagataaatttctaagtatgttgcctccttggcatgcatatgaaagagcttgcgagta |
161 |
Q |
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|||||| |||||| | |||||| || ||| |||| |||||||||||||| ||||||||||| ||||| |
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| T |
35108147 |
ctgaagttggagacagatttcttagcatgctgccaccttggcatgcatacgaaagagcttgtgagta |
35108213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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