View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_56 (Length: 237)
Name: NF17837_low_56
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 31524412 - 31524189
Alignment:
| Q |
1 |
cggaccacctatttgtcttaagcccccatgttgccttccccctccttcatccagtgatataaatccctaaagttgtgttgctcttctactagttttacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524412 |
cggaccacctatttgtcttaagcccccatgttgcctcccccct---tcatccagtgatataaatccctaaagttgtgttgctcttctactagttttacac |
31524316 |
T |
|
| Q |
101 |
caatcaattgtatttgagaaaatctcatatcatatcaaataatcatcttaataagattggttaataaattatatgtaataatcgctccaaatcatatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31524315 |
caatcaattgtatttgagaaaatctcatatcatatcaaataatcatcttaataagattggttaataaattatatgtaataatcgctccaaatcatatata |
31524216 |
T |
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| Q |
201 |
atttatgttacttttaatgtatctctg |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
31524215 |
atttatgttacttttaatgtatctctg |
31524189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 31515664 - 31515441
Alignment:
| Q |
1 |
cggaccacctatttgtcttaagcccccatgttgccttccccctccttcatccagtgatataaatccctaaagttgtgttgctcttctactagttttacac |
100 |
Q |
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|||||||||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31515664 |
cggaccacctatttgtcttaagtcctcatgttgcctcccccct---tcatccagtgatataaatccctaaagttgtgttgcacttctactagttttacac |
31515568 |
T |
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| Q |
101 |
caatcaattgtatttgagaaaatctcatatcatatcaaataatcatcttaataagattggttaataaattatatgtaataatcgctccaaatcatatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31515567 |
caatcaattgtatttgagaaaatctcatatcatatcaaataatcatcttaataagattggttgataaattatatgtaataatcgctccaaatcatatata |
31515468 |
T |
|
| Q |
201 |
atttatgttacttttaatgtatctctg |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
31515467 |
atttatgttacttttaatgtatctctg |
31515441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 31522066 - 31521872
Alignment:
| Q |
1 |
cggaccacctatttgtcttaagcccccatgttgccttccccctccttcatccagtgatataaatccctaaagttgtgttgctcttctactagttttacac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
31522066 |
cggaccacctatttgtcttaagcccccatgctgcctcccccc--cttcatccagtgatataaatccctaaagttgtgctgatcttctactagttttacac |
31521969 |
T |
|
| Q |
101 |
caatcaattgtatttgagaaaatctcatatcatatcaaataatcatcttaataagattggttaataaattatatgtaataatcgctccaaatcatat |
197 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
31521968 |
caatcaattgtattcgagaaaatctaatatcatatcaaataatcatcttaataagattggttgataaattatatgtaataaccgctccaaatcatat |
31521872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 28043039 - 28043084
Alignment:
| Q |
138 |
aataatcatcttaataagattggttaataaattatatgtaataatc |
183 |
Q |
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|||||| || ||||||||||||||||||||| ||||| |||||||| |
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| T |
28043039 |
aataattatattaataagattggttaataaactatatttaataatc |
28043084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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