View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_59 (Length: 224)
Name: NF17837_low_59
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 228244 - 228433
Alignment:
| Q |
17 |
gatgaaagctaaactgttaaagcatgtgtcatgttcaagatacattattagttcttcatcaaggatgaagtatagttatattggcatacatactctctga |
116 |
Q |
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| T |
228244 |
gatgaaagctaaactgttaaagcatgtgtcatgttcaagatacataattagttcttcatcaaggatgaagtatagttatattggcatacatactctctga |
228343 |
T |
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| Q |
117 |
aaagcctaaaaaaccaaaacctagcaatgcatatgcagtttcaataatataaaagcaatcacaggtaacaggaataaaaatgactttttt |
206 |
Q |
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| T |
228344 |
aaagcctaaaaaaccaaaacctagcaatgcatatgcagtttcaataatataaaagcaatcacaggtaacaggaataaaaatgacattttt |
228433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 239105 - 239284
Alignment:
| Q |
17 |
gatgaaagctaaactgttaaagcatgtgtcatgttcaagatacattattagttcttcatcaaggatgaagtatagttatattggcatacatactctctga |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| |
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| T |
239105 |
gatgaaggctaaactgttaaagcatgtgtcatgttcaagatacattattagttcttcatccaggatgaggtatagttatattg----tcatactctctga |
239200 |
T |
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| Q |
117 |
aaagcctaaaaaaccaaaacctagcaatgcatatgcagtttcaataatataaaagcaatcacaggtaacaggaataaaaatgac |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
239201 |
aaagcctaaaaaaccaaattctagcaatgcatatgcagtttcaataatataaaagcaatcactggtaacaggaataaaaatgac |
239284 |
T |
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