View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_60 (Length: 220)
Name: NF17837_low_60
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_60 |
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| [»] scaffold0961 (1 HSPs) |
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| [»] scaffold1113 (1 HSPs) |
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Alignment Details
Target: scaffold0961 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 1323 - 1225
Alignment:
| Q |
111 |
cgacaagtttattccccgcaatcaatcatagattcaaatgcaataataaactacaattgattgaagaatgaaaatcaaatcatacataccttctgatga |
209 |
Q |
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| T |
1323 |
cgacaagtttattccccgcaatcaatcatagattcaaatgcaataataaactacaattgattgaagaatgaaaatcaaatcatacataccttctgatga |
1225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 32682774 - 32682674
Alignment:
| Q |
111 |
cgacaagtttattccccgcaatcaatcat-------agattcaaatgcaataataaactacaattgattgaagaatgaaaatcaaatcatacataccttc |
203 |
Q |
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| T |
32682774 |
cgacaagtttattccccgcaatcaatcatcaatcatagattcaaatgcaataataaactacaattgattgaagaatgaaaatcaaatcatacataccttc |
32682675 |
T |
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| Q |
204 |
t |
204 |
Q |
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| T |
32682674 |
t |
32682674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32682884 - 32682847
Alignment:
| Q |
1 |
atttgcggttttgagatgtggaagatcaactgcagagg |
38 |
Q |
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| T |
32682884 |
atttgcggttttgagatgtggaagatcaactgcagagg |
32682847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 2294 - 2361
Alignment:
| Q |
111 |
cgacaagtttattccccgcaatcaatcatagattcaaatgcaataataaactacaattgattgaagaa |
178 |
Q |
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| T |
2294 |
cgacaagtttattccccgcaatcaatcatagattcaaatgcaataataaactacaattgattgaagaa |
2361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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