View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17837_low_62 (Length: 210)

Name: NF17837_low_62
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17837_low_62
NF17837_low_62
[»] chr5 (7 HSPs)
chr5 (1-210)||(38299630-38299839)
chr5 (38-115)||(17476193-17476271)
chr5 (12-48)||(7148420-7148456)
chr5 (34-83)||(17441256-17441305)
chr5 (33-112)||(17441417-17441498)
chr5 (137-166)||(38292381-38292410)
chr5 (33-112)||(7148284-7148363)
[»] chr2 (6 HSPs)
chr2 (34-112)||(37828446-37828525)
chr2 (35-84)||(4865485-4865534)
chr2 (33-113)||(37828700-37828782)
chr2 (34-78)||(19478722-19478766)
chr2 (12-48)||(5847640-5847677)
chr2 (31-112)||(34233445-34233526)
[»] chr1 (4 HSPs)
chr1 (33-112)||(51249167-51249248)
chr1 (36-109)||(29861423-29861497)
chr1 (12-48)||(29861561-29861597)
chr1 (12-51)||(14614396-14614436)
[»] chr8 (5 HSPs)
chr8 (36-112)||(29795754-29795832)
chr8 (12-51)||(30201862-30201901)
chr8 (37-113)||(1410708-1410784)
chr8 (34-112)||(27187219-27187298)
chr8 (48-112)||(13706209-13706274)
[»] chr6 (3 HSPs)
chr6 (33-112)||(5449485-5449568)
chr6 (55-113)||(1706589-1706647)
chr6 (33-79)||(34397003-34397048)
[»] chr4 (3 HSPs)
chr4 (35-114)||(12828575-12828657)
chr4 (35-114)||(53801527-53801611)
chr4 (89-117)||(20822075-20822103)
[»] chr7 (1 HSPs)
chr7 (12-48)||(42602640-42602676)


Alignment Details
Target: chr5 (Bit Score: 178; Significance: 3e-96; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 38299839 - 38299630
Alignment:
Q  1 gttcagtacccaactcacgcaggttataactcagcgtgagttaactcacgcgggggtattttagtcagtttgtatgagagtgaaagtcttttttgggaga 100  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  38299839 gttcaatatccaactcacgcaggttataactcagcgtgagttaactcacgcgggagtattttagtcagtttgtatgggagtgaacgtcttttttgggaga 38299740  T
Q  101 agagcaattttcttacaattgttttgcggaagaacaattgaaagccaaaacacagcacaatctctacaatatctttattcttttactttttgaagaagct 200  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38299739 agagcaattttcttacaattgatttgcggaagcacaattgaaagccaaaacacagcacaatctctacaatatctttgttcttttactttttgaagaagct 38299640  T
Q  201 aaattagccc 210  Q
    ||||||||||    
T  38299639 aaattagccc 38299630  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 17476193 - 17476271
Alignment:
Q  38 gagttaactcacgcgggggtattttagtcagtttgtatgagagtgaaagtctttt-ttgggagaagagcaattttctta 115  Q
    ||||||||||||| || |||||||| ||||||||||||||||| ||| || |||| ||||||||||| |||||||||||    
T  17476193 gagttaactcacgtggaggtattttggtcagtttgtatgagagcgaacgttttttgttgggagaagaacaattttctta 17476271  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 7148456 - 7148420
Alignment:
Q  12 aactcacgcaggttataactcagcgtgagttaactca 48  Q
    |||||||| ||||||||||||||||||||||||||||    
T  7148456 aactcacgtaggttataactcagcgtgagttaactca 7148420  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 17441305 - 17441256
Alignment:
Q  34 gcgtgagttaactcacgcgggggtattttagtcagtttgtatgagagtga 83  Q
    |||||||||||||||| | | |||||||| ||||||||||||| ||||||    
T  17441305 gcgtgagttaactcacacagaggtatttttgtcagtttgtatgggagtga 17441256  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 17441417 - 17441498
Alignment:
Q  33 agcgtgagttaactcacgcgg-gggtattttagtcagtttgtatgagagtgaaagtctttt-ttgggagaagagcaattttc 112  Q
    |||||||||||||||||| || |||||||||||||| ||||| | |||||||  || |||| ||||||||| | ||||||||    
T  17441417 agcgtgagttaactcacgtggtgggtattttagtcaatttgtgtaagagtgagcgttttttgttgggagaaaatcaattttc 17441498  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 166
Target Start/End: Complemental strand, 38292410 - 38292381
Alignment:
Q  137 attgaaagccaaaacacagcacaatctcta 166  Q
    ||||||||||||||||||||||||||||||    
T  38292410 attgaaagccaaaacacagcacaatctcta 38292381  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 7148363 - 7148284
Alignment:
Q  33 agcgtgagttaactcacgcgggg-gtattttagtcagtttgtatgagagtgaaagtcttttttgggagaagagcaattttc 112  Q
    ||||||||||||||||||  ||| ||||||| ||||||||||||| ||||||   | ||| ||||||||| ||||||||||    
T  7148363 agcgtgagttaactcacgtagggagtattttggtcagtttgtatgggagtgagcttttttgttgggagaa-agcaattttc 7148284  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 37828525 - 37828446
Alignment:
Q  34 gcgtgagttaactcacgcgggggtattttagtcagtttgtatgagagtgaaagtctttt-ttgggagaagagcaattttc 112  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| ||||||  || |||| ||||||||||||||||||||    
T  37828525 gcgtgagttaactcacgcgagggtattttggtcagtttgtatgtgagtgatcgttttttgttgggagaagagcaattttc 37828446  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 4865534 - 4865485
Alignment:
Q  35 cgtgagttaactcacgcgggggtattttagtcagtttgtatgagagtgaa 84  Q
    |||||||||||||||| ||||||||||| || ||||||||||||||||||    
T  4865534 cgtgagttaactcacgtgggggtattttggtaagtttgtatgagagtgaa 4865485  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 37828700 - 37828782
Alignment:
Q  33 agcgtgagttaactcacg-cgggggtattttagtcagtttgtatgagagtgaaagtctttt-ttgggagaagagcaattttct 113  Q
    ||||||||||||||||||  ||||||||||| || |||||||||  ||||||| || |||| | |||||||||||||||||||    
T  37828700 agcgtgagttaactcacgtggggggtattttggtaagtttgtataggagtgaatgttttttgtcgggagaagagcaattttct 37828782  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 19478766 - 19478722
Alignment:
Q  34 gcgtgagttaactcacgcgggggtattttagtcagtttgtatgag 78  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||    
T  19478766 gcgtgacttaactcacgttggggtattttagtcagtttgtatgag 19478722  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 5847640 - 5847677
Alignment:
Q  12 aactcacgcaggttataa-ctcagcgtgagttaactca 48  Q
    |||||||||||||||||| |||||||||||||||||||    
T  5847640 aactcacgcaggttataaactcagcgtgagttaactca 5847677  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 34233526 - 34233445
Alignment:
Q  31 tcagcgtgagttaactcacgcgggggtattttagtcagtttgtatgagagtgaaagtcttttttgggagaagagcaattttc 112  Q
    ||||||||||||||||||||| ||||||||||    ||||||  || |||||| | | |||||| ||||||||||| |||||    
T  34233526 tcagcgtgagttaactcacgcaggggtattttgaaaagtttgattgtgagtgagaatttttttttggagaagagcatttttc 34233445  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 51249248 - 51249167
Alignment:
Q  33 agcgtgagttaactcacgcggggg-tattttagtcagtttgtatgagagtgaaagtctttt-ttgggagaagagcaattttc 112  Q
    ||||||||||||||||||||  || ||||||||||||||| |||||||||| | ||||||| ||||||||||||||||||||    
T  51249248 agcgtgagttaactcacgcgaaggatattttagtcagtttatatgagagtgcacgtcttttgttgggagaagagcaattttc 51249167  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 29861497 - 29861423
Alignment:
Q  36 gtgagttaactcacgcgggggtattttagtcagtttgtatgagagtgaaagtctttt-ttgggagaagagcaatt 109  Q
    |||||||||||||||||| |||||||| |  |||||||||||||||||  || |||| |||||| ||||||||||    
T  29861497 gtgagttaactcacgcggaggtattttggctagtttgtatgagagtgagcgttttttgttgggataagagcaatt 29861423  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 29861561 - 29861597
Alignment:
Q  12 aactcacgcaggttataactcagcgtgagttaactca 48  Q
    ||||||||||||||||||| |||||||||||||||||    
T  29861561 aactcacgcaggttataacccagcgtgagttaactca 29861597  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 14614436 - 14614396
Alignment:
Q  12 aactcacgcaggttataa-ctcagcgtgagttaactcacgc 51  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  14614436 aactcacgcaggttataaacccagcgtgagttaactcacgc 14614396  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 29795832 - 29795754
Alignment:
Q  36 gtgagttaactcacgcgggggtattttagtcagtttgtatgagagtgaaagtctttt--ttgggagaagagcaattttc 112  Q
    |||||||||||||||||| |||||||| |||||||||||||||||| || || ||||  ||| ||||||||||||||||    
T  29795832 gtgagttaactcacgcggaggtattttggtcagtttgtatgagagtaaacgtttttttgttgagagaagagcaattttc 29795754  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 30201862 - 30201901
Alignment:
Q  12 aactcacgcaggttataactcagcgtgagttaactcacgc 51  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  30201862 aactcacgcaggttataagtcagcgtgagttaactcacgc 30201901  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 1410708 - 1410784
Alignment:
Q  37 tgagttaactcacgcgggggtattttagtcagtttgtatgagagtgaaagtcttttttgggagaagagcaattttct 113  Q
    |||||||||||||| || ||||||||  | ||||| ||||  |||||  || |||||||||||||||||||||||||    
T  1410708 tgagttaactcacgtggaggtattttgattagtttatatggcagtgagtgttttttttgggagaagagcaattttct 1410784  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 27187298 - 27187219
Alignment:
Q  34 gcgtgagttaactcacgcgggggtattttagtcagtttgtatgagagtga-aagtcttttttgggagaagagcaattttc 112  Q
    |||||| |||| |||||| |||||||||| ||||||||||||| ||||||  | | |||| |||||||||| ||||||||    
T  27187298 gcgtgacttaaatcacgctggggtatttttgtcagtttgtatgggagtgagtaattttttatgggagaagaccaattttc 27187219  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 13706209 - 13706274
Alignment:
Q  48 acgcgggggtattttagtcagtttgtatgagagtgaaagtctttt-ttgggagaagagcaattttc 112  Q
    ||||||||||||||| || |||||||||| ||||||| || ||||  ||| |||||||||||||||    
T  13706209 acgcgggggtattttggttagtttgtatgggagtgaacgttttttaatggtagaagagcaattttc 13706274  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 5449568 - 5449485
Alignment:
Q  33 agcgtgagttaactcacgcgg--gggtattttagtcagtttgtatgagagtgaaagtcttttttg---ggagaagagcaattttc 112  Q
    ||||||| |||||||||||||  ||| ||||| ||||||||||||| ||||||| | ||||||||   |||||||||||||||||    
T  5449568 agcgtgaattaactcacgcggaagggcattttggtcagtttgtatgggagtgaacg-cttttttgtttggagaagagcaattttc 5449485  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 1706647 - 1706589
Alignment:
Q  55 ggtattttagtcagtttgtatgagagtgaaagtcttttttgggagaagagcaattttct 113  Q
    ||||||||  ||||||||||||| |||||  || ||| |||||||||||||||||||||    
T  1706647 ggtattttgatcagtttgtatgaaagtgagcgtttttattgggagaagagcaattttct 1706589  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 34397003 - 34397048
Alignment:
Q  33 agcgtgagttaactcacgcgggggtattttagtcagtttgtatgaga 79  Q
    ||||||| ||||||||||||||  |||||||||||||||||||||||    
T  34397003 agcgtgaattaactcacgcggga-tattttagtcagtttgtatgaga 34397048  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 12828575 - 12828657
Alignment:
Q  35 cgtgagttaactcacgcggggg-tattttagtcagtttgtatgagagtgaaagtctttt--ttgggagaagagcaattttctt 114  Q
    |||||||||||||||| | | | |||||| |||||||||||||||||||||  | ||||  |||||||||||| |||||||||    
T  12828575 cgtgagttaactcacgtgagagatattttggtcagtttgtatgagagtgaacattttttggttgggagaagagaaattttctt 12828657  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 53801527 - 53801611
Alignment:
Q  35 cgtgagttaactcacgcgg-gggtattttagtcagtttgtatgagagtgaaag----tcttttttgggagaagagcaattttctt 114  Q
    |||||||||||||||| || | ||||||| |||||||||| |||||||||| |    | |||||||||||||||| |||||||||    
T  53801527 cgtgagttaactcacgtggagagtattttggtcagtttgtttgagagtgaacgttttttttttttgggagaagagtaattttctt 53801611  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 20822075 - 20822103
Alignment:
Q  89 ttttttgggagaagagcaattttcttaca 117  Q
    |||||||||||||||||||||||||||||    
T  20822075 ttttttgggagaagagcaattttcttaca 20822103  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 42602676 - 42602640
Alignment:
Q  12 aactcacgcaggttataactcagcgtgagttaactca 48  Q
    |||||| | ||||||||||||||||||||||||||||    
T  42602676 aactcatgtaggttataactcagcgtgagttaactca 42602640  T

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