View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_8 (Length: 531)
Name: NF17837_low_8
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 312
Target Start/End: Original strand, 38677384 - 38677685
Alignment:
| Q |
9 |
gaacaatatgtcacagaacactgatatcagaatcaaaagataaaaagtatcatcaagaaattaaaatacaacagtatgcaattcgtttacaataccccca |
108 |
Q |
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| T |
38677384 |
gaacaaaatgtcacagaacactgatatcagaatcaaaagataaaaagtatcatcaagaaattaaaatacaacagtatgc--ttcatttacaataccccca |
38677481 |
T |
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| Q |
109 |
aaattgaagtgaacaatagcggcaagaaaggggattgcattgtggttttttaaaaatccttgcttaacttgcaactcaagaaatatataataatccgatt |
208 |
Q |
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| T |
38677482 |
aaattgaagtgaacaatagccgcaagaaaggggattgcattgtggttttttaaaaatccttgcttaacttgcaactcaagaaatatataataatccgatt |
38677581 |
T |
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| Q |
209 |
aagagaaaatcaaagtgttttagaataatgaagcagggggacttttccaaagtgtactagaatcatgcagcaaaatcttgatagtgtagaaaatattgtt |
308 |
Q |
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| T |
38677582 |
aagagaaaatcaaagtgttttagaataatgaagcagggggacttttccaaagtgtactagaatcatgcagcaaaatcttgatagtgtagaaaatattgtt |
38677681 |
T |
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| Q |
309 |
taat |
312 |
Q |
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|||| |
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| T |
38677682 |
taat |
38677685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 312 - 516
Target Start/End: Original strand, 38677710 - 38677914
Alignment:
| Q |
312 |
tcttagtatgaataaccctcttggcataaacctcagtcattaaaaacgattgcaatagttaaataaaagtaatatttttaacctagttcacatgtgcaaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38677710 |
tcttagtatgaataaccctcttggcataaacctcagtcattaaaaacgattgcaatagttaaataaaagtaatatttttaacctagttcacatgtgcaaa |
38677809 |
T |
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| Q |
412 |
tttttgtgagatttaccactactttatcaaatagcacaagggttacattaatgataaaaatctcccaagtatttttggtcccctgtattactatactagg |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38677810 |
tttttgtgagatttaccactactttatcaaatagcacaagggttacattaatgataaaaatctcccaagtatttttggtcccctgtattactatactagg |
38677909 |
T |
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| Q |
512 |
ttttt |
516 |
Q |
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||||| |
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| T |
38677910 |
ttttt |
38677914 |
T |
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