View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17837_low_9 (Length: 525)
Name: NF17837_low_9
Description: NF17837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17837_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 135 - 447
Target Start/End: Original strand, 33758744 - 33759056
Alignment:
| Q |
135 |
acagagagagtattgaaaaggttgtgacggctgaatatgttagaagcttgaaggatttgccgatgcgagattttgagagtaaaatttgggaagcctttgg |
234 |
Q |
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| T |
33758744 |
acagagagagtattgaaaaggttgtgacggctgaatatgttagaagcttgaaggatttgccgatgcgagattttgagagtaaaatttgggaagcttttgg |
33758843 |
T |
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| Q |
235 |
gaaacactggtgcattgactatagagatcgcagatcggtaaaacactatcttatgatcactgattcatttgttgttgctgttgttacgtgaacactccaa |
334 |
Q |
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| T |
33758844 |
gaaacactggtgcattgactatagagatcgccgatcggtaaaacactatcttatgatcactgattcatttgttgttgctgttgttacgtgaacactccaa |
33758943 |
T |
|
| Q |
335 |
tacctggagttttgttggatacataccaactcccaatcatttaatctcatgtcattttcttgtatttaactaatttgaaatgaatttgatttttgaatga |
434 |
Q |
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| T |
33758944 |
tacctggagttttgttggatacataccaactcccaatcatttaatctcatgtcattttcttgtatttaactaatttgaaatgaatttgatttttgaatga |
33759043 |
T |
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| Q |
435 |
aaattctttaaag |
447 |
Q |
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| T |
33759044 |
aaattctttaaag |
33759056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 33758623 - 33758700
Alignment:
| Q |
15 |
attaacgacatatttgaactaggttaaccatgtaatttgttgtcaaaattcgatgtcaaatagcataactcttaaaac |
92 |
Q |
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| T |
33758623 |
attaacgacatatttgaactaggttaaccatgtaattttttgtcaaaattcgatgtcaaatagcataactcttaaaac |
33758700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 42960706 - 42960747
Alignment:
| Q |
23 |
catatttgaactaggttaaccatgtaatttgttgtcaaaatt |
64 |
Q |
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| T |
42960706 |
catatttgaactatgttaaccatctaatttgttgtcgaaatt |
42960747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 13853621 - 13853669
Alignment:
| Q |
13 |
tcattaacgacatatttgaactaggttaaccatgtaatttgttgtcaaa |
61 |
Q |
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| T |
13853621 |
tcattaaccacatatttgaactatatcaaccatttaatttgttgtcaaa |
13853669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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