View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_high_1 (Length: 504)
Name: NF17838_high_1
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 13 - 490
Target Start/End: Original strand, 40383908 - 40384385
Alignment:
| Q |
13 |
atgattggatcgtggatgatgtctgtgccgatggagacacggcggcgttctccaccggaaacaccacggtgaccttcatctccgatgacagttgaggcag |
112 |
Q |
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| T |
40383908 |
atgattggatcgtggatgatgtctgtgccgatggagacacggcggcgttctccaccggaaacaccacggtgaccttcatctccgatgacagttgaggcag |
40384007 |
T |
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| Q |
113 |
cgttgcggagaccgagctggtcgatgagtgcttggacacgagcttttttctttgatttggagagagagcgagggagacgaaactcagcagagaacatgag |
212 |
Q |
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| T |
40384008 |
cgttgcggagaccgagctggtcgatgagtgcttggacacgagcttttttctttgatttggagagagagcgagggagacgaaactcagcagagaacatgag |
40384107 |
T |
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| Q |
213 |
agtttcttccacggtgagcatggggaagagaagatcgtcttgcatgacataagctgatataaccttttgaagacttgactccaaaacgtcaccgtttaga |
312 |
Q |
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| T |
40384108 |
agtttcttccacggtgagcatggggaagagaagatcgtcttgcatgacataagctgatataaccttttgaagacttgactccaaaacgtcaccgtttaga |
40384207 |
T |
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| Q |
313 |
gttacagtgcctttgagagactctttggaaattctgtcagcgagagcgtcgatgagagttgacttgccggagccacttgcaccaagaactgccatgattt |
412 |
Q |
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| T |
40384208 |
gttacagtgcctttgagagactctttggaaattctgtcagcgagagcgtcgatgagagttgacttgccggagccacttgcaccaagaactgccatgattt |
40384307 |
T |
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| Q |
413 |
caccgtctcttgcttcaccggagatatcattgaggagaatcttggtgccgtttggttttgtaatttcgggttcttcat |
490 |
Q |
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| T |
40384308 |
caccgtctcttgcttcaccggagatatcattgaggagaatcttggtgccgtttggttttgtaatttcgggttcttcat |
40384385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 263
Target Start/End: Complemental strand, 52375198 - 52374995
Alignment:
| Q |
60 |
ttctccaccggaaacaccacggtgaccttcatctccgatgacagttgaggcagcgttgcggagaccgagctggtcgatgagtgcttggacacgagctttt |
159 |
Q |
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| T |
52375198 |
ttctccaccagagactccacggtgaccttcgtctccgataactgttttcgctgcgttgcggagtcctagttgatcaatcaaagcttgaacacgagcgttt |
52375099 |
T |
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| Q |
160 |
ttctttgatttggagagagagcgagggagacgaaactcagcagagaacatgagagtttcttccacggtgagcatggggaagagaagatcgtcttgcatga |
259 |
Q |
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| T |
52375098 |
ttctttgattttgagagtgatcgcggtaatcggaattcagctgcaaaggtgagagtttcttcaactgtgagcattggaaagaggagatcatcttgcatca |
52374999 |
T |
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| Q |
260 |
cata |
263 |
Q |
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|||| |
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| T |
52374998 |
cata |
52374995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 455
Target Start/End: Complemental strand, 52374855 - 52374803
Alignment:
| Q |
403 |
gccatgatttcaccgtctcttgcttcaccggagatatcattgaggagaatctt |
455 |
Q |
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| T |
52374855 |
gccatgatctcaccgtcacgtgcttcaccggagatttcgttgagcagaatctt |
52374803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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