View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_high_2 (Length: 464)
Name: NF17838_high_2
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 79 - 446
Target Start/End: Complemental strand, 122041 - 121674
Alignment:
| Q |
79 |
gtataatcgctaacaaaattttataatggaaaacaaatataaaaagttgtataactctactacaaaatcaattaactgtgaggctccacagtagatgttc |
178 |
Q |
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| T |
122041 |
gtataatcgctaacaaaattttataatggaaaacaaatataaaaagttgtataactctactacaaaatcaattaactgtgaggctccacagtagatgttc |
121942 |
T |
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| Q |
179 |
taatatgttgtataatctagcacctactacatcatctgcctaaaatcaggtcccatatgttggtgaatcaagtaatcatcattattggacatatcaaaca |
278 |
Q |
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| T |
121941 |
taatatgttgtataatctagcacctactacatcatctgcctaaaatcaggtcccatatgttggtgaatcaagtaatcatcattattggacatatcaaaca |
121842 |
T |
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| Q |
279 |
tcatactctgatgttgtaaaatctggctttgttggtgttggtgtgcccgcaacatttccttctgcctccgtagctccaatactttacgatgcgagttgga |
378 |
Q |
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| T |
121841 |
tcatactctgatgttgtaaaatctggttttgttggtgttggtgtgcccgcaacatttccttctgcctccgtagctccaatactttacgatgcgagttgga |
121742 |
T |
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| Q |
379 |
gtgtttagtcagcacaaatgtagggctagctgcaggcctgtattcgggcaccaatcgacccgacttat |
446 |
Q |
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| T |
121741 |
gtgtttagtgagcacaaatgtagggctagctgcaggcctgtattcgggcaccaatcgacccgacttat |
121674 |
T |
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