View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_high_25 (Length: 222)
Name: NF17838_high_25
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 35979999 - 35979812
Alignment:
| Q |
20 |
tctgattcatgagttgattgttctgcttgannnnnnnngatagaggaagaaaaagcagcatacatatgaagtccacctgtgcaagacatcaatattatca |
119 |
Q |
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| T |
35979999 |
tctgattcatcagttgattgttctgcttgattttttttgatagaggaagaaaaagcagcatacatatgaagtccacctgtgcaagacatcaatattatca |
35979900 |
T |
|
| Q |
120 |
tagacactttagattgaaagtttgtttgctattcgacaccgacacatgtaattatattcaacagctttcat-ttttgtaaattattac |
206 |
Q |
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| T |
35979899 |
tagacactttagattgaaagtttgtttgctattcgacactgacacatgtaattatattcaacagctttcatatttcgtaaattattac |
35979812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 35969889 - 35969693
Alignment:
| Q |
20 |
tctgattcatgagttgattgttctgcttgannnnnnnngatagaggaagaaaaagcagcatacatatgaagtccacctgtgcaagacatcaatattatca |
119 |
Q |
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| T |
35969889 |
tctgattcatgagttgattgctctgcttgattttttttgatagaggaagaaaaagcagcatacatattaagtctacctgtgcaagacatcaatattatca |
35969790 |
T |
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| Q |
120 |
-----------tagacactttagattgaaagtttgtttgctattcgacaccgacacatgtaattatattcaacagctttcatttttgtaaattattact |
207 |
Q |
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| T |
35969789 |
attcataatcatagacactttagattgaaagtttgtttgctattcgacattgacac--gtaattatattcaacagctttcatttttgtaaattattact |
35969693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 35952844 - 35952788
Alignment:
| Q |
63 |
aggaagaaaaagcagcatacatatgaagtccacctgtgcaagacatcaatattatca |
119 |
Q |
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| T |
35952844 |
aggaagaaaaatccgcatacatatcaagtccacctgtgcaagacaataatattatca |
35952788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 35972842 - 35972763
Alignment:
| Q |
20 |
tctgattcatgagttgattgttctgcttgannnnnnnngatagaggaagaaaaagcagcatacatatgaagtccacctgt |
99 |
Q |
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||||||||| |||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
35972842 |
tctgattcaagagttgattgcgctgcttgattttctttgatagaggaagaaaacgcagcatacatatcaagtccacctgt |
35972763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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