View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17838_high_6 (Length: 441)

Name: NF17838_high_6
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17838_high_6
NF17838_high_6
[»] chr1 (21 HSPs)
chr1 (298-425)||(45641450-45641577)
chr1 (14-107)||(38984967-38985058)
chr1 (14-107)||(38991154-38991245)
chr1 (23-106)||(11660242-11660325)
chr1 (14-107)||(28512865-28512956)
chr1 (14-106)||(18534990-18535083)
chr1 (14-106)||(18540716-18540809)
chr1 (14-106)||(27347176-27347271)
chr1 (14-89)||(28519330-28519405)
chr1 (14-106)||(31092958-31093051)
chr1 (14-106)||(31099564-31099657)
chr1 (23-106)||(11654085-11654168)
chr1 (14-107)||(7876146-7876240)
chr1 (14-106)||(37365160-37365255)
chr1 (23-106)||(35625261-35625346)
chr1 (23-106)||(38736104-38736189)
chr1 (14-106)||(37356742-37356837)
chr1 (132-164)||(28512981-28513013)
chr1 (132-164)||(38985083-38985115)
chr1 (132-163)||(28519446-28519477)
chr1 (132-163)||(38991270-38991301)
[»] chr8 (16 HSPs)
chr8 (14-107)||(37204290-37204383)
chr8 (14-107)||(37209767-37209860)
chr8 (14-106)||(30714226-30714319)
chr8 (14-106)||(30722003-30722096)
chr8 (14-107)||(21241227-21241318)
chr8 (14-107)||(21247731-21247822)
chr8 (14-84)||(27679658-27679728)
chr8 (14-106)||(30727611-30727704)
chr8 (14-84)||(27683440-27683510)
chr8 (23-80)||(24042891-24042948)
chr8 (23-64)||(26196961-26197002)
chr8 (132-164)||(21241343-21241375)
chr8 (132-164)||(37204408-37204440)
chr8 (132-163)||(21247847-21247878)
chr8 (132-163)||(27683363-27683394)
chr8 (132-163)||(37209885-37209916)
[»] chr7 (11 HSPs)
chr7 (14-107)||(22822592-22822685)
chr7 (14-107)||(22826895-22826988)
chr7 (14-106)||(29176599-29176692)
chr7 (14-106)||(29185578-29185671)
chr7 (14-107)||(340301-340397)
chr7 (14-107)||(346535-346631)
chr7 (26-82)||(8242609-8242665)
chr7 (26-82)||(8248178-8248234)
chr7 (23-106)||(25830400-25830483)
chr7 (132-164)||(22822710-22822742)
chr7 (132-164)||(22827013-22827045)
[»] chr4 (29 HSPs)
chr4 (14-106)||(910858-910950)
chr4 (14-107)||(12435359-12435450)
chr4 (14-107)||(42404698-42404789)
chr4 (14-107)||(42411162-42411253)
chr4 (14-106)||(30679803-30679896)
chr4 (14-89)||(917317-917392)
chr4 (14-107)||(29333692-29333783)
chr4 (14-106)||(30673710-30673803)
chr4 (23-107)||(18890067-18890151)
chr4 (27-106)||(23188032-23188111)
chr4 (23-106)||(1913742-1913827)
chr4 (23-106)||(1874003-1874086)
chr4 (23-106)||(25687569-25687652)
chr4 (23-106)||(25697337-25697420)
chr4 (14-106)||(12659200-12659295)
chr4 (14-107)||(16325726-16325822)
chr4 (14-107)||(16334770-16334866)
chr4 (23-106)||(23200591-23200674)
chr4 (14-106)||(12665718-12665805)
chr4 (23-78)||(12428922-12428977)
chr4 (23-78)||(12439331-12439386)
chr4 (28-106)||(55325552-55325629)
chr4 (33-80)||(4393790-4393837)
chr4 (29-82)||(33360217-33360270)
chr4 (132-164)||(917243-917275)
chr4 (132-164)||(42404814-42404846)
chr4 (27-107)||(48305351-48305430)
chr4 (132-163)||(12435303-12435334)
chr4 (132-163)||(42411278-42411309)
[»] chr2 (11 HSPs)
chr2 (14-106)||(25445070-25445163)
chr2 (14-106)||(19437548-19437641)
chr2 (14-106)||(25454728-25454821)
chr2 (14-106)||(19443123-19443216)
chr2 (14-106)||(43293147-43293242)
chr2 (14-106)||(43287402-43287497)
chr2 (14-106)||(24056633-24056728)
chr2 (14-107)||(24053296-24053392)
chr2 (23-80)||(31437216-31437273)
chr2 (23-80)||(8872305-8872362)
chr2 (27-80)||(31433114-31433167)
[»] chr3 (12 HSPs)
chr3 (14-107)||(2978245-2978339)
chr3 (14-107)||(2982189-2982283)
chr3 (14-106)||(21453215-21453310)
chr3 (14-106)||(21458389-21458484)
chr3 (14-107)||(21883479-21883575)
chr3 (14-106)||(15752508-15752603)
chr3 (14-106)||(15758301-15758396)
chr3 (23-106)||(21473169-21473254)
chr3 (14-107)||(21877219-21877315)
chr3 (27-106)||(49486733-49486814)
chr3 (27-106)||(49491230-49491311)
chr3 (14-106)||(21477546-21477641)
[»] chr6 (4 HSPs)
chr6 (14-89)||(23427537-23427612)
chr6 (14-89)||(23421691-23421766)
chr6 (14-106)||(18738628-18738721)
chr6 (14-107)||(33660901-33660997)
[»] scaffold0102 (1 HSPs)
scaffold0102 (14-106)||(14080-14173)
[»] chr5 (10 HSPs)
chr5 (14-106)||(23058965-23059058)
chr5 (14-106)||(21171198-21171291)
chr5 (14-106)||(23053390-23053483)
chr5 (23-106)||(35264551-35264634)
chr5 (23-106)||(35270292-35270375)
chr5 (14-107)||(25365402-25365498)
chr5 (14-106)||(39653938-39654031)
chr5 (23-106)||(16675626-16675709)
chr5 (14-106)||(21178059-21178154)
chr5 (45-77)||(2135850-2135882)
[»] scaffold0014 (1 HSPs)
scaffold0014 (23-106)||(111940-112025)
[»] scaffold0591 (1 HSPs)
scaffold0591 (14-107)||(9378-9473)
[»] scaffold0079 (1 HSPs)
scaffold0079 (14-107)||(57994-58090)
[»] scaffold0258 (1 HSPs)
scaffold0258 (23-107)||(6288-6372)


Alignment Details
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 298 - 425
Target Start/End: Original strand, 45641450 - 45641577
Alignment:
Q  298 gaacgaaagtaccaaacacatcaaaacctctgcattttgtgtttcattcattcattcatcaacaactctgttcctgaacaaggacaaccacatcattttt 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  45641450 gaacgaaagtaccaaacacatcaaaacctctgcattttgtgtttcattcattcattcatcaacaactctgttcctgaacaaggacaaccacatcattttc 45641549  T
Q  398 caccccgcactcttctcgtgtttgtctt 425  Q
    ||||||||||||||||||||||||||||    
T  45641550 caccccgcactcttctcgtgtttgtctt 45641577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 38984967 - 38985058
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  38984967 tactaggttttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatacacac--tagtgaataagaatat 38985058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 38991154 - 38991245
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  38991154 tactaggttttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatacacac--tagtgaataagaatat 38991245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 11660242 - 11660325
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11660242 ttgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 11660325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 28512865 - 28512956
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||   |||||||||||||||    
T  28512865 tactaggttttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgagacacac--tagtgaataagaatat 28512956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 18535083 - 18534990
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  18535083 tactaggttattgggcttagttcataagctactctattttcctataaatagagctcatttgtaacattgatatacagatcagtgaataagaata 18534990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 18540809 - 18540716
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  18540809 tactaggttattgggcttagttcataagctactctattttcctataaatagagctcatttgtaacattgatatacagatcagtgaataagaata 18540716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 27347271 - 27347176
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  27347271 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgagatacacacatcagtgaataagaata 27347176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 28519330 - 28519405
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacac 89  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28519330 tactaggttttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgagacacac 28519405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 31093051 - 31092958
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||    
T  31093051 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatatacatcagtgaataaaaata 31092958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 31099657 - 31099564
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||    
T  31099657 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatatacatcagtgaataaaaata 31099564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 11654085 - 11654168
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||    
T  11654085 ttgggcttaattcataagctattctatttccctataaatagagttcatttgtaacattgatatacacatcaatgaataagaata 11654168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 7876146 - 7876240
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    ||||||||| || |||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||    
T  7876146 tactaggttattaggcttagttcgtaagctactatatttccctataaatagagctcatttgtaacattgagatacacattagtgaataagaatat 7876240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 37365255 - 37365160
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||  ||||||||||| | ||||||||||||    
T  37365255 tactaggttattgggcttagttcataagctactatattttcttataaatagagctcatttgtaacattgagatacacacattattgaataagaata 37365160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 35625346 - 35625261
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||  ||||||||||| | ||||||||||||    
T  35625346 ttgggcttagttcataagctactatattttcttataaatagagctcatttgtaacattgagatacacacattattgaataagaata 35625261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 38736104 - 38736189
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||  |||||| |||||||||||||| ||||    
T  38736104 ttgggcttagttcataagctactctattttcttataaatagagttcatttgtaacattcagatacatacatcagtgaataataata 38736189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 37356837 - 37356742
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| ||||||| ||||| | |||||||||||||||||| |||||||  ||||||||||| | ||||||||||||    
T  37356837 tactaggttattgggcttagttcataagctactatattttcttataaatagagctcatttataacattgagatacacacattattgaataagaata 37356742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 28512981 - 28513013
Alignment:
Q  132 attactgtctctatttacttatattcataacac 164  Q
    |||||||||||||||||||||||||||||||||    
T  28512981 attactgtctctatttacttatattcataacac 28513013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 38985083 - 38985115
Alignment:
Q  132 attactgtctctatttacttatattcataacac 164  Q
    |||||||||||||||||||||||||||||||||    
T  38985083 attactgtctctatttacttatattcataacac 38985115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 28519446 - 28519477
Alignment:
Q  132 attactgtctctatttacttatattcataaca 163  Q
    ||||||||||||||||||||||||||||||||    
T  28519446 attactgtctctatttacttatattcataaca 28519477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 38991270 - 38991301
Alignment:
Q  132 attactgtctctatttacttatattcataaca 163  Q
    ||||||||||||||||||||||||||||||||    
T  38991270 attactgtctctatttacttatattcataaca 38991301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 37204290 - 37204383
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37204290 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 37204383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 37209767 - 37209860
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37209767 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 37209860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 30714319 - 30714226
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30714319 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 30714226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 30722096 - 30722003
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30722096 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatacacatcagtgaataagaata 30722003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 21241227 - 21241318
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||    
T  21241227 tactaggttttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatacagac--tagtgaataagaatat 21241318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 21247731 - 21247822
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||    
T  21247731 tactaggttttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatacagac--tagtgaataagaatat 21247822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 27679728 - 27679658
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgata 84  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  27679728 tactaggttttgggcttagttcataagctactctatttccctataaatagagctaatttgtaacattgata 27679658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 30727704 - 30727611
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||| ||||| ||||||| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30727704 tactaggttattgggcttaattcataagctactatattttcctaaaaatagagctcatttgtaacattgatatacacatcagtgaataagaata 30727611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 27683510 - 27683440
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgata 84  Q
    |||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  27683510 tactaggttttgggtttagttcataagttactctatttccctataaatagagctcatttgtaacattgata 27683440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 24042948 - 24042891
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt 80  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||    
T  24042948 ttgggcttagttcataagctactctatttctctataaatagagctcatatgtaacatt 24042891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 26196961 - 26197002
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaataga 64  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  26196961 ttgggcttagttcataagctactctatttccctataaataga 26197002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 21241343 - 21241375
Alignment:
Q  132 attactgtctctatttacttatattcataacac 164  Q
    |||||||||||||||||||||||||||||||||    
T  21241343 attactgtctctatttacttatattcataacac 21241375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 37204408 - 37204440
Alignment:
Q  132 attactgtctctatttacttatattcataacac 164  Q
    |||||||||||||||||||||||||||||||||    
T  37204408 attactgtctctatttacttatattcataacac 37204440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 21247847 - 21247878
Alignment:
Q  132 attactgtctctatttacttatattcataaca 163  Q
    ||||||||||||||||||||||||||||||||    
T  21247847 attactgtctctatttacttatattcataaca 21247878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 27683394 - 27683363
Alignment:
Q  132 attactgtctctatttacttatattcataaca 163  Q
    ||||||||||||||||||||||||||||||||    
T  27683394 attactgtctctatttacttatattcataaca 27683363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 37209885 - 37209916
Alignment:
Q  132 attactgtctctatttacttatattcataaca 163  Q
    ||||||||||||||||||||||||||||||||    
T  37209885 attactgtctctatttacttatattcataaca 37209916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 22822592 - 22822685
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22822592 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 22822685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 22826895 - 22826988
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22826895 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 22826988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 29176599 - 29176692
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29176599 tactaggttattgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatacacacattagtgaataagaata 29176692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 29185578 - 29185671
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29185578 tactaggttattgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatacacacattagtgaataagaata 29185671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 340397 - 340301
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaatat 107  Q
    ||||||||| ||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||    
T  340397 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgggatacacacatcagtgaataggaatat 340301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 346631 - 346535
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaatat 107  Q
    ||||||||| ||| ||||||||||| ||||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||    
T  346631 tactaggttattgagcttagttcataagctactctattttcttataaatagagctcatttgtaacattgggatacacacatcagtgaataggaatat 346535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 8242609 - 8242665
Alignment:
Q  26 ggcttagttcattagctactctatttccctataaatagagctcatttgtaacattga 82  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8242609 ggcttaattcataagctactctatttccctataaatagagctcatttgtaacattga 8242665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 8248178 - 8248234
Alignment:
Q  26 ggcttagttcattagctactctatttccctataaatagagctcatttgtaacattga 82  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  8248178 ggcttaattcataagctactctattttcctataaatagagctcatttgtaacattga 8248234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 25830483 - 25830400
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||||| ||| ||||| | |||||||||||||||||||||| |||||| ||||||   ||||| |||||||||||||||    
T  25830483 ttgggcttagtccataagctattatatttccctataaatagagctcctttgtagcattgagggacacaccagtgaataagaata 25830400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 22822710 - 22822742
Alignment:
Q  132 attactgtctctatttacttatattcataacac 164  Q
    |||||||||||||||||||||||||||||||||    
T  22822710 attactgtctctatttacttatattcataacac 22822742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 22827013 - 22827045
Alignment:
Q  132 attactgtctctatttacttatattcataacac 164  Q
    |||||||||||||||||||||||||||||||||    
T  22827013 attactgtctctatttacttatattcataacac 22827045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 910950 - 910858
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  910950 tactaggttttgggcttagttcataagctactctattttcctataaatagagctcatttgtaacattgatacacagatcagtgaataagaata 910858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 12435450 - 12435359
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  12435450 tactaggttttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatacacac--tagtgaataagaatat 12435359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 42404698 - 42404789
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  42404698 tactaggttttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatacacac--tagtgaataagaatat 42404789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 42411162 - 42411253
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||    
T  42411162 tactaggttttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatacaaac--tagtgaataagaatat 42411253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 30679896 - 30679803
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||    
T  30679896 tactaggttattgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgataaatacattagtgaataagaata 30679803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 917392 - 917317
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacac 89  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  917392 tactaggtttcgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatacacac 917317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 29333692 - 29333783
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||    
T  29333692 tactaggttttgggcttagttcataacctactctatttccctataaataaagctcatttgtaacattgatacacac--tagtgaataagaatat 29333783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 30673803 - 30673710
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||    
T  30673803 tactaggttattgggcttagttcataagctactctatttccctataaatagagttcatttgtaacattgataaatacattagtgaataagaata 30673710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 18890067 - 18890151
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||    
T  18890067 ttgggcttaattcataagctactctatttccctataaatagaactcatttgtaacattgatatacacattagtgaataagaatat 18890151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 23188032 - 23188111
Alignment:
Q  27 gcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  23188032 gcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatagacagataagtgaataagaata 23188111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 1913827 - 1913742
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  1913827 ttgggcttaattcataggctactctatttccctataaatagagctcatttgtaacattgagatacacacatcagtgaataagaata 1913742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 1874086 - 1874003
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| |||||  ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  1874086 ttgggcttaattcataggctactctatttccctataaatatagctcatttgtaacattgagatacacatcagtgaataagaata 1874003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 25687652 - 25687569
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| | | |||||||||||||||||    
T  25687652 ttgggcttaattcataagctactctatttccctataaacagagctcatttgtaacattgatatatagatcagtgaataagaata 25687569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 25697420 - 25697337
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    |||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||    
T  25697420 ttggacttaattcataagctactctatttccctataaatagagctcatttgtaacattgatatatagatcagtgaataagaata 25697337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 12659295 - 12659200
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |  ||||||||||| ||||||||||||||    
T  12659295 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacactgagatacacacattagtgaataagaata 12659200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 16325822 - 16325726
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaatat 107  Q
    ||||||||| ||||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||  ||||||||||| | |||||||||||||    
T  16325822 tactaggttattgggcttagttcataagctactatattttcttataaatagagctcatttgtaacattgagatacacacattattgaataagaatat 16325726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 16334866 - 16334770
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaatat 107  Q
    ||||||||| ||||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||  ||||||||||| | |||||||||||||    
T  16334866 tactaggttattgggcttagttcataagctactatattttcttataaatagagctcatttgtaacattgagatacacacattattgaataagaatat 16334770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 23200591 - 23200674
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||||||| ||| ||||| ||||| |||||    
T  23200591 ttgggcttagttcataagttactctacttccctataaatagaactcatttgtaacattgatagacagatcagcgaatacgaata 23200674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 12665805 - 12665718
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| | |||||||||||| ||||||||||||| | |||||||||||||||||||||     ||||||||||| ||||||||||||||    
T  12665805 tactaggttattggcttagttcataagctactctattttcttataaatagagctcatttgta-----gatacacacattagtgaataagaata 12665718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 12428977 - 12428922
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaaca 78  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  12428977 ttgggcttagttcataagctactctatttccctataaatagaactcatttgtaaca 12428922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 12439386 - 12439331
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaaca 78  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  12439386 ttgggcttagttcataagctactctatttccctataaatagaactcatttgtaaca 12439331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 55325552 - 55325629
Alignment:
Q  28 cttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    |||||||||| | ||||| |||||||||||||||| ||||||||||| ||||||| | | |||||||||||||| ||||    
T  55325552 cttagttcataaactactttatttccctataaataaagctcatttgttacattgaga-aaacatcagtgaataataata 55325629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 4393837 - 4393790
Alignment:
Q  33 ttcattagctactctatttccctataaatagagctcatttgtaacatt 80  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||||||    
T  4393837 ttcataagctactttatttccctataaataaagctcatttgtaacatt 4393790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 33360270 - 33360217
Alignment:
Q  29 ttagttcattagctactctatttccctataaatagagctcatttgtaacattga 82  Q
    |||||| || ||||||||||||| | ||||||||||||||||| ||||||||||    
T  33360270 ttagtttataagctactctattttcttataaatagagctcattcgtaacattga 33360217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 917275 - 917243
Alignment:
Q  132 attactgtctctatttacttatattcataacac 164  Q
    |||||||||||||||||||||||||||||||||    
T  917275 attactgtctctatttacttatattcataacac 917243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 42404814 - 42404846
Alignment:
Q  132 attactgtctctatttacttatattcataacac 164  Q
    |||||||||||||||||||||||||||||||||    
T  42404814 attactgtctctatttacttatattcataacac 42404846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 48305430 - 48305351
Alignment:
Q  27 gcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    |||||||| ||  |||||||||||||||||||||||||| ||| |||||||||| |     ||||||||||||||||||||    
T  48305430 gcttagtttatatgctactctatttccctataaatagagttca-ttgtaacattcagtagtacatcagtgaataagaatat 48305351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 12435334 - 12435303
Alignment:
Q  132 attactgtctctatttacttatattcataaca 163  Q
    ||||||||||||||||||||||||||||||||    
T  12435334 attactgtctctatttacttatattcataaca 12435303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 163
Target Start/End: Original strand, 42411278 - 42411309
Alignment:
Q  132 attactgtctctatttacttatattcataaca 163  Q
    ||||||||||||||||||||||||||||||||    
T  42411278 attactgtctctatttacttatattcataaca 42411309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 25445163 - 25445070
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25445163 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 25445070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 19437641 - 19437548
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  19437641 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgagacacacattagtgaataagaata 19437548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 25454821 - 25454728
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25454821 tactaggttattgagcttaattcataagctactctatttccctataaatagagctcatttgtaacattgatacacacatcattgaataagaata 25454728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 19443216 - 19443123
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  19443216 tactaggttattgggcttaattcataagctactctattttcctataaatagagctcatttgtaacattgagacacacattagtgaataagaata 19443123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 43293242 - 43293147
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  43293242 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgggatacacacatcagtgaataagaata 43293147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 43287497 - 43287402
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  43287497 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgagatacacacattagtgaataagaata 43287402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 24056728 - 24056633
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||||||| |||| |||||||||| ||||||||||||| | ||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  24056728 tactaggttattggacttagttcataagctactctattttcttataaatagagctcatttgtaacattgagatacacacattagtgaataagaata 24056633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 24053392 - 24053296
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaatat 107  Q
    ||||||||| ||||||||||||||| ||||||||||||| | |||||||||||||||||||||| |||  |||||| |||| |||||||||||||||    
T  24053392 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaatattgagatacatacattagtgaataagaatat 24053296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 31437216 - 31437273
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt 80  Q
    ||||||||||||||| ||||||||||||| |||||||||| || ||||||||||||||    
T  31437216 ttgggcttagttcataagctactctattttcctataaataaagttcatttgtaacatt 31437273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 8872305 - 8872362
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt 80  Q
    |||||||||||  ||  |||||| ||||||||||||||||||| ||||||||||||||    
T  8872305 ttgggcttagtctataggctactatatttccctataaatagagttcatttgtaacatt 8872362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 31433114 - 31433167
Alignment:
Q  27 gcttagttcattagctactctatttccctataaatagagctcatttgtaacatt 80  Q
    ||||||||||| || || ||||||||||||||||||  | ||||||||||||||    
T  31433114 gcttagttcataagatattctatttccctataaataatgttcatttgtaacatt 31433167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 2978339 - 2978245
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2978339 tactaggttattgggcttagttcataagctactctattttcctataaatagagctcatttgtaacattgatatacacatcagtgaataagaatat 2978245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 2982283 - 2982189
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  2982283 tactaggttattgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatatacacataagtgaataagaatat 2982189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 21453215 - 21453310
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  21453215 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgggatacacacatcagtgaataagaata 21453310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 21458389 - 21458484
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  21458389 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgggatacacacatcagtgaataagaata 21458484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 21883479 - 21883575
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaatat 107  Q
    ||||||||| ||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||    
T  21883479 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgggatacacacatcagtgaataggaatat 21883575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 15752603 - 15752508
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  15752603 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgagatacacacattagtgaataagaata 15752508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 15758396 - 15758301
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  15758396 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgagatacacacattagtgaataagaata 15758301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 21473169 - 21473254
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    |||| |||||||||| ||||||||||||| | ||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  21473169 ttggacttagttcataagctactctattttcttataaatagagctcatttgtaacattgagatacacacatcagtgaataagaata 21473254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 21877219 - 21877315
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaatat 107  Q
    ||||||||| ||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||  |||||||||||||||||||| ||||||    
T  21877219 tactaggttattgggcttagttcataagctactctattttcttataaatggagctcatttgtaacattgggatacacacatcagtgaataggaatat 21877315  T

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Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 49486814 - 49486733
Alignment:
Q  27 gcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||| |||||  ||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  49486814 gcttaattcataggctactctatttctctataaatagagctcatttgtaacattgagatacacacatcagtgaataagaata 49486733  T

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Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 49491311 - 49491230
Alignment:
Q  27 gcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||| |||||  ||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  49491311 gcttaattcataggctactctatttctctataaatagagctcatttgtaacattgagatacacacatcagtgaataagaata 49491230  T

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Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 21477546 - 21477641
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| ||||||| |||||   ||||||||| ||||||||||||||||  |||||||||||| || ||||||||||    
T  21477546 tactaggttattgggcttagttcataagctactttatttttttataaatagggctcatttgtaacattgagatacacacatcggtaaataagaata 21477641  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 23427537 - 23427612
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacac 89  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23427537 tactaggttttgggcttagttcataagctactctatttccctataaatagagctcatttgtaacattgatacacac 23427612  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 23421691 - 23421766
Alignment:
Q  14 tactaggttttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacac 89  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23421691 tactaggttttgggcttagttcataagttactctatttccctataaatagagctcatttgtaacattgatacacac 23421766  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 18738628 - 18738721
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| | |||| ||||| ||||||||||    
T  18738628 tactaggttattgggcttagttcataagctactctatttacctataaatagagctcatttgtaacattgagagacacgtcagtaaataagaata 18738721  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 33660997 - 33660901
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaatat 107  Q
    ||||||||| ||||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||  |||||||||||| ||||||||||||||    
T  33660997 tactaggttattgggcttagttcataagctactctattttcttataaatagagttcatttgtaacattgagatacacacatcggtgaataagaatat 33660901  T

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Target: scaffold0102 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 14080 - 14173
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  14080 tactaggttattgagcttagttcataagctactctatttccctataaatagagctcatttgtaacattgagagacacatcagtgaataagaata 14173  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 23059058 - 23058965
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  23059058 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgagacacacattagtgaataagaata 23058965  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 21171291 - 21171198
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||    
T  21171291 tactaggttattgggcttaattcataagctactctatttccctataaatagagctcatttgtaacattgagatacacataagtgaataagaata 21171198  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 23053483 - 23053390
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  23053483 tactaggttattgagcttaattcataagctactctatttccctataaatagagctcatttgtaacattgagacacacattagtgaataagaata 23053390  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 35264634 - 35264551
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  35264634 ttgggcttaattcataggctactctatttccctataaatagagctcatttgtaacattgagatacacatcagtgaataagaata 35264551  T

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Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 35270375 - 35270292
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  35270375 ttgggcttaattcataggctactctatttccctataaatagagctcatttgtaacattgagatacacatcagtgaataagaata 35270292  T

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Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 25365498 - 25365402
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattg--atacacacatcagtgaataagaatat 107  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||  | |||||||| |||||||||||||||    
T  25365498 tactaggttattgggcttagttcataagctactctattttcctataaatagagctcatttgtaacattgtaaaacacacattagtgaataagaatat 25365402  T

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Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 39654031 - 39653938
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||| ||||| ||||||| ||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  39654031 tactaggttattgggcttaattcataagctactatatttccttataaatagagctcatttataacattgatatacacatcagtgaataagaata 39653938  T

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Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 16675626 - 16675709
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||    
T  16675626 ttgggcttaattcataagctactatatttccctataaatagagctcatttgtaacattgagatacacataagtgaataagaata 16675709  T

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Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 21178154 - 21178059
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctat--ttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaata 106  Q
    ||||||||| ||||||||| ||||| |||||||||||  || |||||||||||||||||||||||||||||| | |||||| ||||||||||||||    
T  21178154 tactaggttattgggcttaattcataagctactctatattttcctataaatagagctcatttgtaacattgagatacacataagtgaataagaata 21178059  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 2135882 - 2135850
Alignment:
Q  45 tctatttccctataaatagagctcatttgtaac 77  Q
    ||||||||| |||||||||||||||||||||||    
T  2135882 tctatttccatataaatagagctcatttgtaac 2135850  T

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Target: scaffold0014 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 111940 - 112025
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 106  Q
    ||||||||| |||||  |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  111940 ttgggcttaattcataggctactctatttccctataaatagagttcatttgtaacattgagatacacacatcagtgaataagaata 112025  T

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Target: scaffold0591 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 9378 - 9473
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaatat 107  Q
    ||||||||| ||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||  ||||||||||||| |||||||||||||    
T  9378 tactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattgggatacacacatca-tgaataagaatat 9473  T

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Target: scaffold0079 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 57994 - 58090
Alignment:
Q  14 tactaggtt-ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaatat 107  Q
    ||||||||| ||||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||  ||||||||||| | |||||||||||||    
T  57994 tactaggttattgggcttagttcataagctactatattttcttataaatagagctcatttgtaacattgagatacacacattattgaataagaatat 58090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 6372 - 6288
Alignment:
Q  23 ttgggcttagttcattagctactctatttccctataaatagagctcatttgtaacattgatacacacatcagtgaataagaatat 107  Q
    ||||||||||||||| ||||||||||||||||| |||||||| |||| |||||||| |||   |  |||||||||||||||||||    
T  6372 ttgggcttagttcataagctactctatttccctgtaaatagaactcaattgtaacagtgagtgatgcatcagtgaataagaatat 6288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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