View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_low_1 (Length: 698)
Name: NF17838_low_1
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 348 - 613
Target Start/End: Complemental strand, 6761945 - 6761681
Alignment:
| Q |
348 |
aaaggaaaatcgccggtgacttgtttatcgctatttcgcaaagtaaattcagctagccatgaacctggaaaaactccagtttatcttaatgtgtatgact |
447 |
Q |
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| T |
6761945 |
aaaggaaaatcaccggtgactcgtttttctttatttcgcaaagtaaattcagctagccatggacctggaaaaactccagtttatcttaatgtgtatgact |
6761846 |
T |
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| Q |
448 |
tggtacccatgaatggttatgtgtattgggccggtcttggtatctatcactccagtgtcgaaggtacggttttaggctcgtatggcatcaaatttgctca |
547 |
Q |
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| T |
6761845 |
tgacacccatgaatggttacgtgtattgggccggtcttggtatctatcactctggtgtcgaaggtacggtttt-ggctcgtatgtcttcaaatttaatca |
6761747 |
T |
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| Q |
548 |
tgctctgcctcttaatcttggcatatgacttaaattaacctggctttttctcaaatgtattagaat |
613 |
Q |
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| T |
6761746 |
tgctctgtctcttaatcttggcatatgacttaaattatcctggccttttctcaaatgtattagaat |
6761681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 6752840 - 6752677
Alignment:
| Q |
19 |
aaattactatacattcgacttacttttaaccagaatcaattcattcaaattctatatttgtctaggcagaatcaaacacacttgtttagtatcgacatgt |
118 |
Q |
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| T |
6752840 |
aaattactatacattcgacttacttttaaccagaatcaattcattcaaaatctatatttgtctaggcagaatcaaacacacttgtttagtatcgacgtgt |
6752741 |
T |
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| Q |
119 |
aaggtcattccgccccccatttgtcgaaatttgaccgcatattcatttgtatttcctgaattat |
182 |
Q |
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| T |
6752740 |
aaggtcatccccccccccatttgtcgaaatttgaccgcatattcatttgtatttcctgaattat |
6752677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 239 - 382
Target Start/End: Complemental strand, 6752643 - 6752502
Alignment:
| Q |
239 |
aatgactgagaatgtgaacattataaataggcgatgctctatcaaacatttgttgaatgcaggtactatgcgagtgtcaccttagggaaagatgaaattg |
338 |
Q |
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| T |
6752643 |
aatgactgagaatgtgaacattataaataggtgatgctctatcaaacatttgttgaatgcaagtactatgtgagtgtcaccttagggaaagatgaaattg |
6752544 |
T |
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| Q |
339 |
aactctaagaaaggaaaatcgccggtgacttgtttatcgctatt |
382 |
Q |
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| T |
6752543 |
aa--ctaagaaaggaaaatcaccggtgacttgtttatcgctatt |
6752502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 6762324 - 6761973
Alignment:
| Q |
19 |
aaattactatacattcgacttacttttaaccagaatcaattcattcaaattctatat--ttgtctaggcagaatcaaacacacttgtttagtatcgacat |
116 |
Q |
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| T |
6762324 |
aaattactatacattcaacttaattt-aaccagaatcaattcattcaaaatctatatatttgtcatcgcagaatcaaacaggcttttttagtatcgacat |
6762226 |
T |
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| Q |
117 |
gtaaggtcattccgcccccc--------------atttgtcgaaatttgaccgcatattcatttgtatttcctgaattatctcataagaaggaagtttct |
202 |
Q |
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| T |
6762225 |
gtaaggtcttttcttccccccttaaaaatagttcatttgtcgaaatttgactgcatcttcatttgtatttcctgaatcatc--ataagaaggaagtttct |
6762128 |
T |
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| Q |
203 |
gctaattgttttatacaaaacaaannnnnnnnnnnnaatgactgagaatgt-gaacattataaataggcgatgctcta--tcaaacatttgttgaatgca |
299 |
Q |
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| T |
6762127 |
gctaattattttataccaagtaagttatttatttttaatgagtgaaaatgttgaacataataaataggtgatcctctaactcaaacatttgttgaatgca |
6762028 |
T |
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| Q |
300 |
ggtactatgcgagtgt-caccttagggaaagatgaaattgaactctaagaaagga |
353 |
Q |
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| T |
6762027 |
ggtactatgtgagtgttcgccttagggaaagatgaaattgaagtctaagaaagga |
6761973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 27045561 - 27045609
Alignment:
| Q |
19 |
aaattactatacattcgacttacttttaaccagaatcaattcattcaaa |
67 |
Q |
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| T |
27045561 |
aaataactctacattcaacttacttttaactaaaatcaattcattcaaa |
27045609 |
T |
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