View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_low_12 (Length: 400)
Name: NF17838_low_12
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 118 - 394
Target Start/End: Original strand, 35152112 - 35152388
Alignment:
| Q |
118 |
tgtgaaatattgataagtaaagatggtggaagtttaagggcaaacccaaagttcttgtacttgtctattgaagaagttgttgctagaaacccctttgtct |
217 |
Q |
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| T |
35152112 |
tgtgaaatattgataagtaaagatggtggaagtttaagggcaaacccaaagttcttgtacttgtctattgaagaagttgttgctagaaacccctttgtct |
35152211 |
T |
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| Q |
218 |
tcactaatatcccaatgtctaatattgttatagtttgatttgacataatagttcccacttttagtacccatccacataagtcgatattctatatcctctt |
317 |
Q |
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| T |
35152212 |
tcactaatatcccaatgtctaatattgttatagtttgatttgacataatagttcccacttttagtacccatccacataagtcgatattctatatcctctt |
35152311 |
T |
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| Q |
318 |
gaattattcaaatttgcttaatctgatcaccaccagtcctttaggaacgtattatcaattaaagtatgatgatgatg |
394 |
Q |
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| T |
35152312 |
gaattattcaaatttgcttaatctgatcaccaccagtcctttaggaacgtattatcaattaaagtataatgatgatg |
35152388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 35152002 - 35152047
Alignment:
| Q |
11 |
ctaggacaacatgtgtgacaaagaggacattatatttatttttact |
56 |
Q |
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| T |
35152002 |
ctaggacaacatgtgtgacaaagaggacattatatttatttttact |
35152047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 36067740 - 36067786
Alignment:
| Q |
122 |
aaatattgataagtaaagatggtggaagtttaagggcaaacccaaag |
168 |
Q |
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| T |
36067740 |
aaatattgataagtaaatatggtggaagttcaaggaaaaacccaaag |
36067786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 29025063 - 29025110
Alignment:
| Q |
118 |
tgtgaaatattgataagtaaagatggtggaagtttaagggcaaaccca |
165 |
Q |
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| T |
29025063 |
tgtgaaatattgataagtaaagatggttgaagtttatggacaaaccca |
29025110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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