View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_low_13 (Length: 391)
Name: NF17838_low_13
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 28 - 329
Target Start/End: Original strand, 24755097 - 24755395
Alignment:
| Q |
28 |
accaaaacagttccgaaggaaactgaaacaagaatttccaccgtgtttttcctcaagaggtttgatagtaacccctgcagcttggagcctcgaagcacag |
127 |
Q |
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| T |
24755097 |
accaaaacatttccaaaggaaattgaagcaacaatttccattggctgtttcctcagcaagtttgatagtaacccctgcagcttggagcctcgaagcacag |
24755196 |
T |
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| Q |
128 |
cgatttagtttgggcttcggatgctgatctgtaccaataatgggtactacataattaccaaccccatcatgttttctctcacctttactgttaacgaaaa |
227 |
Q |
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| T |
24755197 |
cgcattagtttgggcttcagatgctga---gtactatcaatgggtactacataattaccaaccacgtgactttttctctcaccttccctgttaacgaaaa |
24755293 |
T |
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| Q |
228 |
agtggacaatatcaagaatatgaggagctttgaagtaacttggattttgaacttcaggctgagagtagcctatgatagacagaataagattattaatctt |
327 |
Q |
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| T |
24755294 |
cgtggacaatatcaataacatgaggagaattaaagtagtttggatcttgaacctgagagtgagagtagcctgtgatagatagaaaaagattattaatctt |
24755393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 28 - 255
Target Start/End: Complemental strand, 24842886 - 24842650
Alignment:
| Q |
28 |
accaaaacagttccgaaggaaactgaaacaagaatttccaccgtgtttttcctcaagaggtttgat---agtaacccctgcagcttggagcctcgaagca |
124 |
Q |
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| T |
24842886 |
accaaaacagttccgaaggaaactgaagcaagacattccgctgcctgtttcctcagcaagtttgatgaaagtaacccccgcagcttggagccgcgaagca |
24842787 |
T |
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| Q |
125 |
cagcgatttagtttgggcttcggatgctgatctgtaccaataatgggtactacataattaccaaccccatcatgttttctctcacct------ttactgt |
218 |
Q |
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| T |
24842786 |
ctgcgctttagtttcagcttcggatactgagtagtgtcaataatggatactacatgattgcccaccgcatcactttctctctcacttttcatcttattgt |
24842687 |
T |
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| Q |
219 |
taacgaaaaagtggacaatatcaagaatatgaggagc |
255 |
Q |
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| T |
24842686 |
taacggagaagtggacactatcaagaatatgaggagc |
24842650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 24897054 - 24897101
Alignment:
| Q |
204 |
tctcacctttactgttaacgaaaaagtggacaatatcaagaatatgag |
251 |
Q |
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| T |
24897054 |
tctcacctttcccgttaacgaaaaagtggacaatatcaagaatatgag |
24897101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 24855792 - 24855832
Alignment:
| Q |
217 |
gttaacgaaaaagtggacaatatcaagaatatgaggagctt |
257 |
Q |
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| T |
24855792 |
gttaacgaaaaagtggacaatatcaagaatgtgaggggctt |
24855832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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