View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_low_14 (Length: 388)
Name: NF17838_low_14
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 195 - 376
Target Start/End: Complemental strand, 39181164 - 39180974
Alignment:
| Q |
195 |
atgatatggaacacttgatgataaaaaatccttctaatgaactcctttacaagaatgaattgaacatcatatggtttcgtatgcagatattgtccatgtg |
294 |
Q |
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| T |
39181164 |
atgatatggaacacttgatgataaaaaatccttctaatgaactcctttacaagaatgaattgaacatcatatggtttcgtatgcagatattgtccatgtg |
39181065 |
T |
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| Q |
295 |
aatttgagaccatcttgacagacatgaaccagtg---------caccttcatatatgattctagccactttaaataatcttttgtactctc |
376 |
Q |
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| T |
39181064 |
aatttgagaccatcttgacagacatgaaccagtgcaccatatgcaccttcatatatgattctagccactttaaataatcttttgtactctc |
39180974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 39181260 - 39181166
Alignment:
| Q |
37 |
gaattatatttaacaggttgctaaaaaattatgtcataaataaacacaatacataagggacttgataatagaatgatataaattttaccaaatag |
131 |
Q |
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| T |
39181260 |
gaattatatttaataggttgctaaaaaattatgtcataaataaacacaatacataagggacttgataatagaatgatataaattttaccaaatag |
39181166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 39178711 - 39178664
Alignment:
| Q |
329 |
caccttcatatatgattctagccactttaaataatcttttgtactctc |
376 |
Q |
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| T |
39178711 |
caccttcatatatgattctagccgctttaaataatcttctgtactctc |
39178664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 44 - 205
Target Start/End: Complemental strand, 429058 - 428896
Alignment:
| Q |
44 |
atttaacaggttgctaaaaaattatgtcataaataaacacaatacataagggacttgataatagaatgatataaattttaccaaatagtttgaactaata |
143 |
Q |
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| T |
429058 |
atttaataggttgctaaaatattatgccataaataaacataatgcataagggtat-gatgttagaatgatagaagttttaccaaatagctaaaactaata |
428960 |
T |
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| Q |
144 |
tcccccaaatacaaagacttggtg--gtagtggtagaaatttttcttctcatgatgatatggaa |
205 |
Q |
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| T |
428959 |
tcctcctaatacaaagacttgatgatgtaatgatagaaatttttattttcatgataacatggaa |
428896 |
T |
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