View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_low_15 (Length: 372)
Name: NF17838_low_15
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 354
Target Start/End: Complemental strand, 39802300 - 39801967
Alignment:
| Q |
17 |
cataggacgttttagaatacatgaataaaaagaaccacaaagtaaacaacttgaccactacatnnnnnnnnnnnnnnnnnntcatggatgggatagcagt |
116 |
Q |
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| T |
39802300 |
cataggacgttttagaatacatgaataaa--gaaccacaaagtaaacaacttgaacactacataaaaaaacaaa-------tcatggatgggatagcagt |
39802210 |
T |
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| Q |
117 |
gtccctgcttagcttaaaaaggacaccaagcgtggatctgttcgatgcggaagaccagttcgagctcccaaagctctacacttggcagctgcctgcagtc |
216 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39802209 |
gtccctgcttagcttaaaaaggacgccaagcgtggatctgttcgatgcggaagaccagttcgagctcccaaagctctacacttggcagctgcctgcagtc |
39802110 |
T |
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| Q |
217 |
atcacattgaaattagt-----nnnnnnnnncatcaacattctattttgttactttcaatttgaaatatcattctgtagtacgaacagaattgtcttagc |
311 |
Q |
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| T |
39802109 |
atcacattgaaattagtaaaaaaaaaaaaaaaatcaacattctattttgttactttcaatttgaaatatcattctgtagtacgaacagaattgtcttagc |
39802010 |
T |
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| Q |
312 |
aacttaccacttgagcagcaaatggtagcattatctctggtgc |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39802009 |
aacttaccacttgagcagcaaatggtagcattatctctggtgc |
39801967 |
T |
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