View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_low_2 (Length: 620)
Name: NF17838_low_2
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 606
Target Start/End: Original strand, 33451720 - 33452307
Alignment:
| Q |
19 |
ctaactacttcaagctacctttccacttcaacctctagcacttgattgtaaggttttacacttttactatgtaaacaatttcagattgagataaagtgac |
118 |
Q |
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| T |
33451720 |
ctaactacttcatgctacctttccacttcaacctctagcacttgattgtatggttttacacttttactatgtaaacaatttcagagtaagttgaactgac |
33451819 |
T |
|
| Q |
119 |
atattatt-atccctagcaaataatttcaataactctcatgacttttattaatcatcaataacaagatgatattacattcaccaaagcaaataac----a |
213 |
Q |
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| T |
33451820 |
atattatccatc---agcaaataatctcaatgcctctcatgggttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaa |
33451916 |
T |
|
| Q |
214 |
taaataataatgaagggggctaattattagtaataactagaaggtnnnnnnnnntagcctctccttgaaacatcacacatgatcgattaacatccaatct |
313 |
Q |
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| T |
33451917 |
taaataataatgaagggggctaattattagtaataactaactgggaaaaaaac--agcctctccttgaaacatcacacatgatcggttaacatccaatct |
33452014 |
T |
|
| Q |
314 |
taaacagctatcaatctctgttaaatatttggaacaacttctttggcagcagggatcgacgggggacaccactagcaggccatggtgaactcgaaggtgg |
413 |
Q |
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| T |
33452015 |
taaacagctatcaatctctgttaaatatttggaaaagcttctttggcagcagggatcgacggggaacgctactagcaggccatggtgcattcgaaggcgg |
33452114 |
T |
|
| Q |
414 |
tgcttcaggtgtcgccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgt |
513 |
Q |
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| T |
33452115 |
tgcttcaggtgtcaccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgt |
33452214 |
T |
|
| Q |
514 |
ccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccataggttgtaattataattttatcttgtccactagttaacacaggt |
606 |
Q |
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| T |
33452215 |
ccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccataggttgtaattataattttgtcttgcccactggttaacacaggt |
33452307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 90 - 606
Target Start/End: Original strand, 33441571 - 33442087
Alignment:
| Q |
90 |
taaacaatttcagattgagataaagtgacatattatt-atccctagcaaataatttcaataactctcatgacttttattaatcatcaataacaagatgat |
188 |
Q |
| |
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| T |
33441571 |
taaacaatttcagagtaagttgaagtgacatattatccatc---agcaaataatctcaatgcctctcatgggttttattaatcataaataacaaaatgat |
33441667 |
T |
|
| Q |
189 |
attacattcaccaaagcaaataac----ataaataataatgaagggggctaattattagtaataactagaaggtnnnnnnnnntagcctctccttgaaac |
284 |
Q |
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| T |
33441668 |
attacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactaactgggaaaaaaac--agcctctccttgaaac |
33441765 |
T |
|
| Q |
285 |
atcacacatgatcgattaacatccaatcttaaacagctatcaatctctgttaaatatttggaacaacttctttggcagcagggatcgacgggggacacca |
384 |
Q |
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| T |
33441766 |
atcacacatgatcggttaacatccaatcttaaacagctatcaatctctgttaaatatttggaaaagcttctttggcagcagggatcgacggggaacgcta |
33441865 |
T |
|
| Q |
385 |
ctagcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgtt |
484 |
Q |
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| T |
33441866 |
ctagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgtt |
33441965 |
T |
|
| Q |
485 |
ttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccataggttgtaattataattttatc |
584 |
Q |
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| T |
33441966 |
ttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccataggttgtaattataattttgtc |
33442065 |
T |
|
| Q |
585 |
ttgtccactagttaacacaggt |
606 |
Q |
| |
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| T |
33442066 |
ttgcccactggttaacacaggt |
33442087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 464 - 611
Target Start/End: Original strand, 33399629 - 33399776
Alignment:
| Q |
464 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata |
563 |
Q |
| |
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||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |
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| T |
33399629 |
ctggataccaaccatcttgttttggtaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccata |
33399728 |
T |
|
| Q |
564 |
ggttgtaattataattttatcttgtccactagttaacacaggttctgc |
611 |
Q |
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| T |
33399729 |
ggttgtcaatgcaattttatcatgtccacttgttaacactggtgctgc |
33399776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 451 - 602
Target Start/End: Original strand, 33395729 - 33395880
Alignment:
| Q |
451 |
gaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtacc |
550 |
Q |
| |
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|||||||| |||||||||||||||||| ||| ||||||||| |||||||||||||||| ||| | |||||||| | | ||| ||||||||||| |
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| T |
33395729 |
gaaggtgagggtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatgtacc |
33395828 |
T |
|
| Q |
551 |
atcttctcccataggttgtaattataattttatcttgtccactagttaacac |
602 |
Q |
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| T |
33395829 |
atcttcttccataggttgtcaataaaattgtatcatgtccactagttaacac |
33395880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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