View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_low_21 (Length: 306)
Name: NF17838_low_21
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_low_21 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 31605894 - 31606199
Alignment:
| Q |
1 |
tatactaattaacatttatcattctaaaatataactaagaaaatattaaaccataagaattaatgcatggaatgcaatgtacaatacttacctttgaagt |
100 |
Q |
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| T |
31605894 |
tatactaattaacatttatcattctaaaatataactaagaaaatattaaaccataagaattaatgcatggaatgcaatgtacaatacttacctttgaagt |
31605993 |
T |
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| Q |
101 |
tcgaaaatggtgtttgttttctaatctatattcatgcatgacccaattacttttctcaccccttggagccctacccttataaaacactagggttttcttc |
200 |
Q |
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| T |
31605994 |
tcgaaaatggtgtttgttttctaatctatattcatgcatgacccaattacttttctcaccccttggagccctacccttataaaacactagggttttcttc |
31606093 |
T |
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| Q |
201 |
atccctaccaaaactccaccacgaaatatttccttatcttttccagtggttttccaataccctgattcagtggctcgattggttctaagtccagttggat |
300 |
Q |
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| T |
31606094 |
atccctaccaaaactccaccacgaaatatttccttatcttttccagtggttttccaataccctgattcagtggctcgattggttctaagtccagttggat |
31606193 |
T |
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| Q |
301 |
attttc |
306 |
Q |
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|||||| |
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| T |
31606194 |
attttc |
31606199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 10317616 - 10317695
Alignment:
| Q |
123 |
aatctatattcatgcatgacccaattacttttctcaccccttggagccctacccttataaaacactagggttttcttcat |
202 |
Q |
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| T |
10317616 |
aatctaaattcatgcatgacccaattggttttctctcctcttggagctctacctttatagaacacaagagttttcttcat |
10317695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 10317733 - 10317800
Alignment:
| Q |
234 |
ttatcttttccagtggttttccaataccctgattcagtggctcgattggttctaagtccagttggata |
301 |
Q |
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| T |
10317733 |
ttatcttttccagttgctttccaatagcctgattcagttgctctattagttcttgttccagttggata |
10317800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 11462904 - 11462936
Alignment:
| Q |
125 |
tctatattcatgcatgacccaattacttttctc |
157 |
Q |
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| T |
11462904 |
tctatattcatgcattacccaattacttttctc |
11462936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 50580382 - 50580410
Alignment:
| Q |
129 |
tattcatgcatgacccaattacttttctc |
157 |
Q |
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| T |
50580382 |
tattcatgcatgacccaattacttttctc |
50580410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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