View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_low_22 (Length: 304)
Name: NF17838_low_22
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 51858314 - 51858087
Alignment:
| Q |
24 |
gtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcgaagttgg |
123 |
Q |
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| T |
51858314 |
gtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcgaagttgg |
51858215 |
T |
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| Q |
124 |
caacaatggttgtgtgcgaaatattttggtttcggtgagtagcaaaaacttagcagcttgaatatgaagtctatgaaaaggaggggaaagaatagagcgc |
223 |
Q |
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| T |
51858214 |
caacaatggttgtgtgcgaaatattttggtttcggtgagtagcaaaaacttagcagcttgaatatgaagtctatgaaaaggaggggaaagaatagagcgc |
51858115 |
T |
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| Q |
224 |
cataaagcacagacactacggaatcgaa |
251 |
Q |
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| T |
51858114 |
cataaagcacaggcactacggaatcgaa |
51858087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 34865175 - 34865268
Alignment:
| Q |
24 |
gtaagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgattgttagtcaaaatatctaagtgacgaagtttgctagatttcga |
117 |
Q |
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| T |
34865175 |
gtaagttcatgaaatctaacacattagacgggaaagtgtgtgacatatgagtgttagttacaacatctaagtgacgaagtttgccagatttcga |
34865268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 253
Target Start/End: Original strand, 34865308 - 34865455
Alignment:
| Q |
118 |
agttggcaacaatggttgtgtgcgaaatattttggtttcggtgagtagcaaaaacttagcagcttgaatatgaagtctatga------------aaagga |
205 |
Q |
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| T |
34865308 |
agttggaaataatggttgtaggcgaaatattttggtttcggtgaaaagcaaaaacttaccatctggaatgcgaagtgtatgagaaggagaaggaaaagga |
34865407 |
T |
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| Q |
206 |
ggggaaagaatagagcgccataaagcacagacactacggaatcgaaga |
253 |
Q |
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| T |
34865408 |
gggggaagaatagagcgcaataaagcacagacactacggaatcgaaga |
34865455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 34145435 - 34145347
Alignment:
| Q |
26 |
aagttcatgaaatctaacacattagatgggaatgtgtgtgagatgtgat-tgttagtcaaaatatctaagtgacgaagtttgctagattt |
114 |
Q |
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|||||||||||||||||||| || ||||| ||||||||| ||| ||| |||||||||| | |||||||||||||| ||| | |||||| |
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| T |
34145435 |
aagttcatgaaatctaacacgttgaatgggtatgtgtgtgttatg-gatgtgttagtcaagacatctaagtgacgaaattttccagattt |
34145347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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