View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_low_23 (Length: 295)
Name: NF17838_low_23
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 41245800 - 41246067
Alignment:
| Q |
12 |
gaaattaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagc |
111 |
Q |
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| T |
41245800 |
gaaattaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagc |
41245899 |
T |
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| Q |
112 |
ctctctaccatagcaggttcatcacagaagtttcttagcttcacttggttccatgctacctcaattccttcttcttgatcgaatgcacgatacactttct |
211 |
Q |
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| T |
41245900 |
ctctctaccatagcaggttcatcacagaagtttcttagcttcacttggttccatgctacctctattccttcttcttgatcgaatgcacgatacactttct |
41245999 |
T |
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| Q |
212 |
tcacagcaccgcatcctaatagttcgggatatctaccataccgaccggttggatcggtttctgcaaat |
279 |
Q |
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| T |
41246000 |
tcacagcaccgcatcctaatagttcgggatatctaccataccgaccggttggatcggtttctgcaaat |
41246067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 197
Target Start/End: Original strand, 10083056 - 10083220
Alignment:
| Q |
33 |
atcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagcctctctaccatagcaggttca |
132 |
Q |
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|||||| ||||||||| |||||||| ||||||||||| |||| |||| |||||| | ||| ||||||||||| ||||| || || | ||| ||||| ||| |
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| T |
10083056 |
atcatccctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagtaatctcacttcagagtaaagtctatcaatcattgcagggtca |
10083155 |
T |
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| Q |
133 |
tcacagaagtttcttagcttcacttggttccatgctacctcaattccttcttcttgatcgaatgc |
197 |
Q |
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| T |
10083156 |
ttgctgaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaatgc |
10083220 |
T |
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