View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_low_26 (Length: 283)
Name: NF17838_low_26
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_low_26 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 10721518 - 10721253
Alignment:
| Q |
18 |
ctaagaaaataaagcactttgtcattggtcaagacaacacataccactttttcattaggcaaaacaatgcatacctcttttatattggtgaagacaacat |
117 |
Q |
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| T |
10721518 |
ctaagaaaataaagcactttgtcattggtcaagacaacacataccactttttcattaggcaaaacaatgcatacctcttttatattggtgaagacaacat |
10721419 |
T |
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| Q |
118 |
atgtctctttctcgttggggatagcaccttgtctacctatttctttcataaaagtagttttataaatttactttccatcaaacccatatcactcaaatgt |
217 |
Q |
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| T |
10721418 |
atgtctctttctcgttggggatagcaccttgtctacctctttctttcacaaaagcagttttataaatttattttccatcaaaaccatatcactcaaatgt |
10721319 |
T |
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| Q |
218 |
ttctctccgcagactctcaaacccataccactttcgccatcactatcatcatcttgttcatagtag |
283 |
Q |
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| T |
10721318 |
ttctctccgcagactctcaaacccataccactttcgccatcactatcatcatcttgttcatagtag |
10721253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 64 - 262
Target Start/End: Original strand, 10721057 - 10721255
Alignment:
| Q |
64 |
ctttttcattaggcaaaacaatgcatacctcttttatattggtgaagacaacatatgtctctttctcgttggggatagcaccttgtctacctatttcttt |
163 |
Q |
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| T |
10721057 |
ctttttcattagccaagacaatacatgcctcttttctattggccaagacaacatttgtctctttctcattggtcacaccacctcatctacctctttcttt |
10721156 |
T |
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| Q |
164 |
cataaaagtagttttataaatttactttccatcaaacccatatcactcaaatgtttctctccgcagactctcaaacccataccactttcgccatcacta |
262 |
Q |
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| T |
10721157 |
cacaaaagtagttttgtatatttactttccatcaaacccatatcactcaaatgtttctcttcgcacactctcaaacccataccactttcaccatcacta |
10721255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 205
Target Start/End: Complemental strand, 124512 - 124343
Alignment:
| Q |
34 |
ctttgtcattggtcaagacaacacataccactttttcattaggcaaaacaatgcatacctcttttatattggtgaagacaacatatgtctctttctcgtt |
133 |
Q |
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| T |
124512 |
ctttgtcattggtcaagacaacacatgcctcttttt-attagccatgacagtgcatgcctcttttctattggtcaagacaacatgtgtctctttctcatt |
124414 |
T |
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| Q |
134 |
ggggatagcaccttgtctacctatttctttcataaaagtagttttataaatttactttccatcaaacccata |
205 |
Q |
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| T |
124413 |
ggccacaccacctcatctacgtttctctttcttaaaa-tggttctataaatttactttccatcaaactcata |
124343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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