View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17838_low_27 (Length: 277)
Name: NF17838_low_27
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 22523918 - 22524174
Alignment:
| Q |
1 |
ttggccagtgatgagattaacgttgcttccgaattgagtttcgtgattcgaatggcacataaaattctctaaccgaagnnnnnnnatgattcctgcttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22523918 |
ttggccagtgatgagattaacgttgcttccgaattgagtttcgtgattcgaatggcacataaaattctctaaccgaagttttttgatgattcctgcttcc |
22524017 |
T |
|
| Q |
101 |
agagatggcgaaaccctagaagaactagactcgtatgtgcttctcgcacgcttcattctgaaatgttcctttcggagtgaactcgatgaaaaaacggtga |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22524018 |
agagatggcgaaacccttgaagaactagactcgtatgtgcttctcgcacgcttcattctgaaatgttcctttcggagtgaactcgatgaaaaaagggtga |
22524117 |
T |
|
| Q |
201 |
agttgaaatgatgcgttttgcgaaggtgctaaaataaaaactgcagcgagtagtgaa |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22524118 |
agttgaaatgatgcgttttgcgaaggtgctaaaataaaaactgcagcgagtagtgaa |
22524174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 13404704 - 13404585
Alignment:
| Q |
5 |
ccagtgatgagattaacgttgcttccgaattgagtttcgtgattcgaatggcacataaaattctctaaccgaagnnnnnnnatgattcctgcttccagag |
104 |
Q |
| |
|
||||||||||||||||||| || || || | |||||| ||||| ||||||||||| |||||||| |||||||| |||||||| ||||||||| |
|
|
| T |
13404704 |
ccagtgatgagattaacgtgactcccaaactcagtttcatgattggaatggcacatgaaattctccaaccgaagcttcttgatgattcccgcttccagac |
13404605 |
T |
|
| Q |
105 |
atggcgaaaccctagaagaa |
124 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
13404604 |
tcggcgaaaccgaagaagaa |
13404585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University