View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17838_low_29 (Length: 265)

Name: NF17838_low_29
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17838_low_29
NF17838_low_29
[»] chr7 (17 HSPs)
chr7 (168-240)||(41018969-41019041)
chr7 (50-100)||(41018801-41018851)
chr7 (1-49)||(41018730-41018778)
chr7 (50-96)||(43159463-43159509)
chr7 (51-97)||(3874823-3874869)
chr7 (5-40)||(44189276-44189311)
chr7 (1-47)||(35822933-35822979)
chr7 (1-47)||(48145591-48145637)
chr7 (50-99)||(4225890-4225939)
chr7 (50-87)||(10591045-10591081)
chr7 (1-46)||(22540985-22541030)
chr7 (6-51)||(31467211-31467256)
chr7 (5-50)||(40112910-40112955)
chr7 (5-41)||(22918134-22918170)
chr7 (1-41)||(40854619-40854659)
chr7 (1-41)||(41989707-41989747)
chr7 (5-41)||(44895537-44895573)
[»] chr8 (12 HSPs)
chr8 (50-97)||(13106617-13106664)
chr8 (1-47)||(38675670-38675716)
chr8 (1-41)||(35067227-35067267)
chr8 (1-47)||(25830204-25830250)
chr8 (50-90)||(145794-145833)
chr8 (1-45)||(7777140-7777184)
chr8 (5-53)||(10692509-10692557)
chr8 (1-41)||(12655989-12656029)
chr8 (5-41)||(22719510-22719546)
chr8 (5-41)||(27325828-27325864)
chr8 (5-49)||(37449382-37449426)
chr8 (5-41)||(43397851-43397887)
[»] chr5 (14 HSPs)
chr5 (5-49)||(13309953-13309997)
chr5 (50-97)||(7552854-7552901)
chr5 (1-40)||(33958225-33958264)
chr5 (1-47)||(4088510-4088556)
chr5 (5-47)||(18660829-18660871)
chr5 (1-47)||(22098322-22098368)
chr5 (5-41)||(7076533-7076569)
chr5 (5-41)||(14923143-14923179)
chr5 (1-41)||(16690566-16690606)
chr5 (5-41)||(26791209-26791245)
chr5 (50-97)||(33958146-33958193)
chr5 (53-97)||(35634722-35634766)
chr5 (1-41)||(40364635-40364675)
chr5 (9-49)||(41321329-41321369)
[»] chr6 (10 HSPs)
chr6 (50-97)||(17181822-17181869)
chr6 (5-41)||(1156790-1156826)
chr6 (1-41)||(24900840-24900880)
chr6 (1-47)||(13423035-13423081)
chr6 (50-88)||(29465671-29465709)
chr6 (5-41)||(552863-552899)
chr6 (57-97)||(4820511-4820551)
chr6 (5-41)||(25811803-25811839)
chr6 (5-49)||(26595419-26595463)
chr6 (50-98)||(32316814-32316862)
[»] chr3 (17 HSPs)
chr3 (50-97)||(5114215-5114262)
chr3 (50-95)||(50559101-50559146)
chr3 (5-41)||(37302616-37302652)
chr3 (50-97)||(35376968-35377015)
chr3 (5-47)||(28700531-28700573)
chr3 (50-96)||(44413283-44413329)
chr3 (50-96)||(49780628-49780674)
chr3 (6-40)||(55151683-55151717)
chr3 (50-91)||(50206863-50206904)
chr3 (5-41)||(5244299-5244335)
chr3 (5-49)||(24480408-24480452)
chr3 (5-41)||(27541467-27541503)
chr3 (50-98)||(41670467-41670515)
chr3 (5-49)||(49761377-49761421)
chr3 (5-49)||(50314695-50314739)
chr3 (1-41)||(52714800-52714840)
chr3 (5-41)||(52939721-52939757)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-47)||(94840-94886)
[»] chr1 (16 HSPs)
chr1 (57-98)||(31827095-31827136)
chr1 (5-49)||(8828078-8828122)
chr1 (5-49)||(44519108-44519152)
chr1 (5-49)||(48261210-48261254)
chr1 (50-97)||(18434932-18434979)
chr1 (1-40)||(51080056-51080095)
chr1 (5-47)||(49065323-49065365)
chr1 (1-47)||(49446756-49446802)
chr1 (1-47)||(50242377-50242423)
chr1 (50-99)||(52576186-52576236)
chr1 (50-91)||(10889939-10889980)
chr1 (1-41)||(9988018-9988058)
chr1 (57-97)||(21401542-21401582)
chr1 (5-41)||(31088251-31088287)
chr1 (57-97)||(45640445-45640485)
chr1 (5-41)||(52576267-52576303)
[»] chr4 (16 HSPs)
chr4 (57-97)||(1627442-1627482)
chr4 (5-49)||(24575808-24575852)
chr4 (1-41)||(36123424-36123464)
chr4 (50-97)||(2575677-2575724)
chr4 (50-97)||(39654961-39655008)
chr4 (1-40)||(50721710-50721749)
chr4 (1-47)||(11546859-11546905)
chr4 (1-47)||(19232092-19232138)
chr4 (1-47)||(49585061-49585107)
chr4 (5-46)||(25123231-25123272)
chr4 (1-41)||(7632426-7632466)
chr4 (5-41)||(10250480-10250516)
chr4 (56-96)||(24045937-24045977)
chr4 (1-49)||(31559605-31559653)
chr4 (57-97)||(34616705-34616745)
chr4 (5-49)||(51324539-51324583)
[»] chr2 (13 HSPs)
chr2 (50-98)||(1907649-1907697)
chr2 (50-98)||(7663953-7664000)
chr2 (1-49)||(7664023-7664071)
chr2 (1-41)||(29449278-29449318)
chr2 (50-97)||(9760155-9760202)
chr2 (50-97)||(21611542-21611589)
chr2 (50-100)||(27490614-27490664)
chr2 (50-91)||(37105775-37105816)
chr2 (5-41)||(9207660-9207696)
chr2 (5-41)||(18254174-18254210)
chr2 (50-98)||(18846748-18846796)
chr2 (5-41)||(22416283-22416319)
chr2 (1-41)||(40599243-40599283)
[»] scaffold0053 (1 HSPs)
scaffold0053 (1-47)||(12564-12610)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 41018969 - 41019041
Alignment:
Q  168 aaaaccaatatgataaaattgtgatacaaatatgaccattttaatataacttttacaaaacaagggtctattt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41018969 aaaaccaatatgataaaattgtgatacaaatatgaccattttaatataacttttacaaaacaagggtctattt 41019041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 41018801 - 41018851
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactctaaa 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41018801 ttgtcataaaagttgtcacctaaatagttattcaaataacacaactctaaa 41018851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41018730 - 41018778
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatacct 49  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  41018730 tatatttttactttctctctctattactttggtttttgtgttaatacct 41018778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 43159509 - 43159463
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactc 96  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||    
T  43159509 ttgtcatcaaagttgtcacctaaatggttgttcaaataacacaactc 43159463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 3874869 - 3874823
Alignment:
Q  51 tgtcataaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||||||    
T  3874869 tgtcataaaagttgtcatctaaatagttcttcaaataaaacaactct 3874823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 44189311 - 44189276
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtg 40  Q
    ||||||||||||||||||| ||||||||||||||||    
T  44189311 tttttactttctctctctattactttggtttttgtg 44189276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35822979 - 35822933
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    ||||||||||||||||||||||| | ||||| ||||||||| |||||    
T  35822979 tatatttttactttctctctctattgctttgatttttgtgccaatac 35822933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 48145591 - 48145637
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    ||||||||||||||||||||||| ||||||| | ||||||| |||||    
T  48145591 tatatttttactttctctctctattactttgatatttgtgccaatac 48145637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 4225890 - 4225939
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactctaa 99  Q
    |||||| | ||||||||||||||| | |||||||||||||||| ||||||    
T  4225890 ttgtcaaataagttgtcacctaaaaaattgttcaaataacacatctctaa 4225939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 10591081 - 10591045
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaata 87  Q
    |||||||||||||||||||| |||||||||||||||||    
T  10591081 ttgtcataaaagttgtcacc-aaatagttgttcaaata 10591045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22541030 - 22540985
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaata 46  Q
    ||||||||||||||||||||||| || |||||||||| || |||||    
T  22541030 tatatttttactttctctctctattattttggtttttatgttaata 22540985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 31467256 - 31467211
Alignment:
Q  6 ttttactttctctctctagtactttggtttttgtgctaataccttt 51  Q
    |||||||||||||||||  || |||||||||||||| |||||||||    
T  31467256 ttttactttctctctcttttattttggtttttgtgccaataccttt 31467211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 40112955 - 40112910
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaatacctt 50  Q
    ||||||||||||||||||| | ||||||||||||||| | ||||||    
T  40112955 tttttactttctctctctattgctttggtttttgtgccactacctt 40112910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 22918170 - 22918134
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  22918170 tttttactttctctctctattgctttggtttttgtgc 22918134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40854659 - 40854619
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||||||| | ||||| |||||||||    
T  40854659 tatatttttactttctctctctattgctttgatttttgtgc 40854619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41989747 - 41989707
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgc 41  Q
    |||||||||||||||||||| || | |||||||||||||||    
T  41989747 tatatttttactttctctctttattgctttggtttttgtgc 41989707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 44895573 - 44895537
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  44895573 tttttactttctctctctattgctttggtttttgtgc 44895537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 13106617 - 13106664
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  13106617 ttgttataaaagttgtcacctaaatggttgttcaaataacacaactct 13106664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38675670 - 38675716
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    ||||||||||||||||||||||| | ||||||||||||||| |||||    
T  38675670 tatatttttactttctctctctatttctttggtttttgtgccaatac 38675716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 35067227 - 35067267
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  35067227 tatatttttactttctctctctattgctttggtttttgtgc 35067267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25830250 - 25830204
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    ||||||||||||||||||||||| ||||||| | ||||||| |||||    
T  25830250 tatatttttactttctctctctattactttgatatttgtgccaatac 25830204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 145794 - 145833
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataaca 90  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  145794 ttgtcataaaagttgtcaca-aaatagttgttcaaataaca 145833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7777184 - 7777140
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaat 45  Q
    ||||||||||||||||||||||| ||||||| | |||||| ||||    
T  7777184 tatatttttactttctctctctattactttgatatttgtgttaat 7777140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 10692509 - 10692557
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaatacctttgt 53  Q
    ||||||||||||||||||| |  |||||||||||||| | |||||||||    
T  10692509 tttttactttctctctctattgttttggtttttgtgccactacctttgt 10692557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12655989 - 12656029
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||||||| ||||||  |||||||||    
T  12655989 tatatttttactttctctctctattactttcatttttgtgc 12656029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 22719510 - 22719546
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  22719510 tttttactttctctctctattgctttggtttttgtgc 22719546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 27325828 - 27325864
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  27325828 tttttactttctctctctattgctttggtttttgtgc 27325864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 37449426 - 37449382
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaatacct 49  Q
    |||||||||||| |||||| | ||||||||||||||||| |||||    
T  37449426 tttttactttctgtctctattgctttggtttttgtgctactacct 37449382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 43397851 - 43397887
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    |||||||||||||| |||| |||||||||||||||||    
T  43397851 tttttactttctctttctattactttggtttttgtgc 43397887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 13309953 - 13309997
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaatacct 49  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||    
T  13309953 tttttactttctctctctactactttggtttttgtgttaatacct 13309997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 7552901 - 7552854
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    |||||| ||||||||||| |||||| | ||||||||||||||||||||    
T  7552901 ttgtcacaaaagttgtcatctaaatggatgttcaaataacacaactct 7552854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 33958264 - 33958225
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtg 40  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  33958264 tatatttttactttctctctctattgctttggtttttgtg 33958225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4088510 - 4088556
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    |||||||||||||||| |||||| | |||||||||| ||||||||||    
T  4088510 tatatttttactttctttctctattgctttggttttcgtgctaatac 4088556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 18660829 - 18660871
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    ||||||||||||||||||| | ||||||||||||||| |||||    
T  18660829 tttttactttctctctctattgctttggtttttgtgccaatac 18660871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22098322 - 22098368
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    ||||||||||||||||||||||| ||||||| | ||||||| |||||    
T  22098322 tatatttttactttctctctctattactttgatatttgtgccaatac 22098368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 7076569 - 7076533
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  7076569 tttttactttctctctctattgctttggtttttgtgc 7076533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 14923143 - 14923179
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  14923143 tttttactttctctctctattgctttggtttttgtgc 14923179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16690566 - 16690606
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgc 41  Q
    |||||||||||||||| |||||| | |||||||||||||||    
T  16690566 tatatttttactttctttctctattgctttggtttttgtgc 16690606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 26791245 - 26791209
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  26791245 tttttactttctctctctattgctttggtttttgtgc 26791209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 33958193 - 33958146
Alignment:
Q  50 ttgtcataaaagttgtcacc-taaatagttgttcaaataacacaactct 97  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||||||    
T  33958193 ttgtcataaaagttgtcaccttaaatggttg-tcaaataacacaactct 33958146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 35634766 - 35634722
Alignment:
Q  53 tcataaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    |||||||||||||||| || || | ||||||||||||||||||||    
T  35634766 tcataaaagttgtcacatatatggatgttcaaataacacaactct 35634722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 40364635 - 40364675
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||| ||||||||||||||| ||||||| |||||||||    
T  40364635 tatatttctactttctctctctattactttgatttttgtgc 40364675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 41321329 - 41321369
Alignment:
Q  9 tactttctctctctagtactttggtttttgtgctaatacct 49  Q
    ||||||||||||||| ||||||||||||||||  |||||||    
T  41321329 tactttctctctctattactttggtttttgtgtcaatacct 41321369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 17181869 - 17181822
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    |||||||||||||||| |||||||| |||||| |||||||||||||||    
T  17181869 ttgtcataaaagttgttacctaaatggttgtttaaataacacaactct 17181822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 1156790 - 1156826
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| |||||||||||||||||    
T  1156790 tttttactttctctctctattactttggtttttgtgc 1156826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24900840 - 24900880
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  24900840 tatatttttactttctctctctattgctttggtttttgtgc 24900880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13423035 - 13423081
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    ||||||||||||||||||||||| || ||| |||||||||| |||||    
T  13423035 tatatttttactttctctctctattattttagtttttgtgccaatac 13423081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 88
Target Start/End: Complemental strand, 29465709 - 29465671
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataa 88  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  29465709 ttgtcataaaagttgtcacttaaatggttgttcaaataa 29465671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 552863 - 552899
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  552863 tttttactttctctctctattgctttggtttttgtgc 552899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 4820511 - 4820551
Alignment:
Q  57 aaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    ||||||| |||  ||||||||||||||||||||||||||||    
T  4820511 aaaagttatcatgtaaatagttgttcaaataacacaactct 4820551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 25811839 - 25811803
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  25811839 tttttactttctctctctattgctttggtttttgtgc 25811803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 26595419 - 26595463
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaatacct 49  Q
    ||||||||||||||||||| | ||||||||||||||  |||||||    
T  26595419 tttttactttctctctctattgctttggtttttgtgtcaatacct 26595463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 32316862 - 32316814
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactcta 98  Q
    |||||| |||||||||||| || || | |||||||||||||||||||||    
T  32316862 ttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcta 32316814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 5114215 - 5114262
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  5114215 ttgtcataaaaattgtcacataaatagatgttcaaataacacaactct 5114262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 50559146 - 50559101
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaact 95  Q
    ||||||||||| || |||| ||||||||||||||||||||||||||    
T  50559146 ttgtcataaaaattatcacataaatagttgttcaaataacacaact 50559101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 37302616 - 37302652
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| |||||||||||||||||    
T  37302616 tttttactttctctctctattactttggtttttgtgc 37302652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 35377015 - 35376968
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    |||||| ||||||||||| |||||| | ||||||||||||||||||||    
T  35377015 ttgtcacaaaagttgtcatctaaatggatgttcaaataacacaactct 35376968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 28700531 - 28700573
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    ||||||||||||||||||| | ||||||||||||||| |||||    
T  28700531 tttttactttctctctctattgctttggtttttgtgccaatac 28700573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 44413329 - 44413283
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactc 96  Q
    |||||| |||||||||||| || |||| |||||||||||||||||||    
T  44413329 ttgtcacaaaagttgtcacatatatagatgttcaaataacacaactc 44413283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 49780674 - 49780628
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactc 96  Q
    ||||||||||| || |||| ||||||||| |||||||||||||||||    
T  49780674 ttgtcataaaaattatcacttaaatagttattcaaataacacaactc 49780628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 55151717 - 55151683
Alignment:
Q  6 ttttactttctctctctagtactttggtttttgtg 40  Q
    |||||||||||||||||||| ||||||||||||||    
T  55151717 ttttactttctctctctagtgctttggtttttgtg 55151683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 50206904 - 50206863
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacac 91  Q
    ||||| |||||||||||| ||||||||||||| |||||||||    
T  50206904 ttgtcctaaaagttgtcaactaaatagttgtttaaataacac 50206863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 5244299 - 5244335
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  5244299 tttttactttctctctctattgctttggtttttgtgc 5244335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 24480452 - 24480408
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaatacct 49  Q
    |||||||||| ||| |||| ||||||||||||||||| |||||||    
T  24480452 tttttactttatctatctattactttggtttttgtgcaaatacct 24480408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 27541503 - 27541467
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  27541503 tttttactttctctctctattgctttggtttttgtgc 27541467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 41670515 - 41670467
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactcta 98  Q
    |||||| ||||||||||||  |||| ||||||||||||||||| |||||    
T  41670515 ttgtcacaaaagttgtcactcaaatggttgttcaaataacacatctcta 41670467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 49761377 - 49761421
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaatacct 49  Q
    |||||||||| |||||||| | ||||||||||||||| |||||||    
T  49761377 tttttactttatctctctattgctttggtttttgtgcaaatacct 49761421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 50314695 - 50314739
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaatacct 49  Q
    ||||||||||||||||||| ||||||| ||||||||  |||||||    
T  50314695 tttttactttctctctctattactttgatttttgtgtcaatacct 50314739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 52714800 - 52714840
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||||||| | ||||| |||||||||    
T  52714800 tatatttttactttctctctctattgctttgatttttgtgc 52714840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 52939721 - 52939757
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  52939721 tttttactttctctctctattgctttggtttttgtgc 52939757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 94886 - 94840
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    |||| |||||||||||||||||| ||||||| |||||||||||||||    
T  94886 tataattttactttctctctctattactttgatttttgtgctaatac 94840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 31827095 - 31827136
Alignment:
Q  57 aaaagttgtcacctaaatagttgttcaaataacacaactcta 98  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  31827095 aaaagttgtcatctaaatagatgttcaaataacacaactcta 31827136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 8828122 - 8828078
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaatacct 49  Q
    ||||||||||||||||||| | ||||||||||||||| |||||||    
T  8828122 tttttactttctctctctattgctttggtttttgtgccaatacct 8828078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 44519152 - 44519108
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaatacct 49  Q
    ||||||||||||||||||| | ||||| |||||||||||||||||    
T  44519152 tttttactttctctctctattgctttgatttttgtgctaatacct 44519108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 48261210 - 48261254
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaatacct 49  Q
    ||||||||||||||||||| | ||||||||||||||| |||||||    
T  48261210 tttttactttctctctctattgctttggtttttgtgccaatacct 48261254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 18434932 - 18434979
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    |||||| ||||||||||| |||||||| | ||||||||||||||||||    
T  18434932 ttgtcacaaaagttgtcatctaaatagattttcaaataacacaactct 18434979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 51080095 - 51080056
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtg 40  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  51080095 tatatttttactttctctctctattgctttggtttttgtg 51080056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 49065365 - 49065323
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    ||||||||||||||||||| | ||||||||||||||| |||||    
T  49065365 tttttactttctctctctattgctttggtttttgtgccaatac 49065323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 49446802 - 49446756
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    ||||||||||||||||||||||| ||||||| | ||||||| |||||    
T  49446802 tatatttttactttctctctctattactttgatatttgtgccaatac 49446756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 50242377 - 50242423
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    |||| |||||||||||||||||| |||||||||||| |||| |||||    
T  50242377 tataattttactttctctctctattactttggttttcgtgccaatac 50242423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 52576236 - 52576186
Alignment:
Q  50 ttgtcataaaagttgtcacctaaat-agttgttcaaataacacaactctaa 99  Q
    |||||| ||||||||||||||| || | |||||||||||||||||||||||    
T  52576236 ttgtcacaaaagttgtcacctatatgaattgttcaaataacacaactctaa 52576186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 10889980 - 10889939
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacac 91  Q
    |||||| ||||||||||| | |||||||||||||||||||||    
T  10889980 ttgtcacaaaagttgtcaaccaaatagttgttcaaataacac 10889939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 9988018 - 9988058
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||||||| | ||||| |||||||||    
T  9988018 tatatttttactttctctctctattgctttgatttttgtgc 9988058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 21401542 - 21401582
Alignment:
Q  57 aaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    |||||||||||| ||||| | ||||||||||||||||||||    
T  21401542 aaaagttgtcacataaatggatgttcaaataacacaactct 21401582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 31088251 - 31088287
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  31088251 tttttactttctctctctattgctttggtttttgtgc 31088287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 45640445 - 45640485
Alignment:
Q  57 aaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    |||||||||||| || |||| ||||||||||||||||||||    
T  45640445 aaaagttgtcacatatatagatgttcaaataacacaactct 45640485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 52576303 - 52576267
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  52576303 tttttactttctctctctattgctttggtttttgtgc 52576267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 1627482 - 1627442
Alignment:
Q  57 aaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  1627482 aaaagttgtcatccaaatagttgttcaaataacacaactct 1627442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 24575852 - 24575808
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaatacct 49  Q
    ||||||||||||||||||| | ||||||||||||||| |||||||    
T  24575852 tttttactttctctctctattgctttggtttttgtgccaatacct 24575808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36123464 - 36123424
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  36123464 tatatttttactttctctctctattactttgatttttgtgc 36123424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 2575724 - 2575677
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    |||||| |||||||||||  ||||||| ||||||||||||||||||||    
T  2575724 ttgtcacaaaagttgtcatataaatagatgttcaaataacacaactct 2575677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 39654961 - 39655008
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    ||||| ||||| || ||| |||||||||||||||||||||||||||||    
T  39654961 ttgtcttaaaaattatcatctaaatagttgttcaaataacacaactct 39655008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 50721749 - 50721710
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtg 40  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  50721749 tatatttttactttctctctctactgctttggtttttgtg 50721710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11546905 - 11546859
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    ||||||||||||||||||||||| ||||||| | ||||||| |||||    
T  11546905 tatatttttactttctctctctattactttgatatttgtgccaatac 11546859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 19232138 - 19232092
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    ||||||||||||||||||||||| | ||||| ||||||||| |||||    
T  19232138 tatatttttactttctctctctattgctttgatttttgtgccaatac 19232092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 49585061 - 49585107
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    ||||||||||||||||||||||| ||||||| | ||||||| |||||    
T  49585061 tatatttttactttctctctctattactttgatatttgtgccaatac 49585107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 25123272 - 25123231
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaata 46  Q
    ||||||||||||||||||| | ||| ||||||||||||||||    
T  25123272 tttttactttctctctctattgcttaggtttttgtgctaata 25123231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7632466 - 7632426
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||||||| | ||||| |||||||||    
T  7632466 tatatttttactttctctctctattgctttgatttttgtgc 7632426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 10250516 - 10250480
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  10250516 tttttactttctctctctattgctttggtttttgtgc 10250480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 24045937 - 24045977
Alignment:
Q  56 taaaagttgtcacctaaatagttgttcaaataacacaactc 96  Q
    ||||||||||||| ||| | |||||||||||||||||||||    
T  24045937 taaaagttgtcacataattggttgttcaaataacacaactc 24045977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31559605 - 31559653
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatacct 49  Q
    ||||||||||||||||||||||| |  ||||||||| ||| ||||||||    
T  31559605 tatatttttactttctctctctattgttttggttttcgtgttaatacct 31559653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 34616705 - 34616745
Alignment:
Q  57 aaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    |||||||||||  ||||||| ||||||||||||||||||||    
T  34616705 aaaagttgtcatataaatagatgttcaaataacacaactct 34616745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 51324583 - 51324539
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgctaatacct 49  Q
    ||||||||||||||||||| || |||||||| |||| ||||||||    
T  51324583 tttttactttctctctctattattttggtttctgtgttaatacct 51324539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 1907697 - 1907649
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactcta 98  Q
    |||||||| ||||||||| ||||||  ||||||||||||||||||||||    
T  1907697 ttgtcatacaagttgtcatctaaatgattgttcaaataacacaactcta 1907649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 7664000 - 7663953
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactcta 98  Q
    ||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  7664000 ttgtcataaaa-ttgtcacctaaatgattgttcaaataacacaactcta 7663953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7664071 - 7664023
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatacct 49  Q
    ||||||||||||||||||||||| | ||||||||||||||  |||||||    
T  7664071 tatatttttactttctctctctattgctttggtttttgtgtcaatacct 7664023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29449278 - 29449318
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  29449278 tatatttttactttctctctctattactttgatttttgtgc 29449318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 9760155 - 9760202
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    |||||| |||||||||||| || |||| ||||||||||||||||||||    
T  9760155 ttgtcacaaaagttgtcacatatatagatgttcaaataacacaactct 9760202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 21611589 - 21611542
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactct 97  Q
    ||||||||||||||||||| || || | ||||||||||||||||||||    
T  21611589 ttgtcataaaagttgtcacatatatggatgttcaaataacacaactct 21611542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 27490664 - 27490614
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactctaaa 100  Q
    |||||| ||||||||||| | |||| | |||||||||||||||||||||||    
T  27490664 ttgtcacaaaagttgtcatcaaaatggatgttcaaataacacaactctaaa 27490614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 37105775 - 37105816
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacac 91  Q
    |||||| ||||||||||| | |||||||||||||||||||||    
T  37105775 ttgtcacaaaagttgtcaaccaaatagttgttcaaataacac 37105816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 9207660 - 9207696
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  9207660 tttttactttctctctctattgctttggtttttgtgc 9207696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 18254210 - 18254174
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  18254210 tttttactttctctctctattgctttggtttttgtgc 18254174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 18846748 - 18846796
Alignment:
Q  50 ttgtcataaaagttgtcacctaaatagttgttcaaataacacaactcta 98  Q
    ||||||||||| |||||| |||||| | ||||||||||||| |||||||    
T  18846748 ttgtcataaaaattgtcatctaaatggatgttcaaataacataactcta 18846796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 22416283 - 22416319
Alignment:
Q  5 tttttactttctctctctagtactttggtttttgtgc 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  22416283 tttttactttctctctctattgctttggtttttgtgc 22416319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40599283 - 40599243
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgc 41  Q
    |||||||||||||||||||| || | |||||||||||||||    
T  40599283 tatatttttactttctctctatattgctttggtttttgtgc 40599243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12564 - 12610
Alignment:
Q  1 tatatttttactttctctctctagtactttggtttttgtgctaatac 47  Q
    ||||||||||||||||||||||| ||||||| | ||||||| |||||    
T  12564 tatatttttactttctctctctattactttgatatttgtgccaatac 12610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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