View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17838_low_30 (Length: 255)

Name: NF17838_low_30
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17838_low_30
NF17838_low_30
[»] chr1 (6 HSPs)
chr1 (15-249)||(47627123-47627357)
chr1 (58-212)||(47584262-47584416)
chr1 (76-212)||(47574562-47574698)
chr1 (70-192)||(47593025-47593147)
chr1 (17-107)||(47698431-47698521)
chr1 (163-220)||(6525231-6525288)
[»] chr3 (1 HSPs)
chr3 (70-238)||(36067065-36067233)
[»] chr6 (2 HSPs)
chr6 (67-236)||(21968250-21968419)
chr6 (82-200)||(22086149-22086267)
[»] chr5 (3 HSPs)
chr5 (127-212)||(28829061-28829146)
chr5 (73-212)||(28854668-28854807)
chr5 (73-212)||(28860026-28860165)
[»] chr2 (1 HSPs)
chr2 (73-133)||(2662479-2662539)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 47627357 - 47627123
Alignment:
Q  15 tcactatgtgcccacaactctatttgtatgtccttgaacttgttctatagctaccatccttgccatgccaaaatcagagatttttggattcatattgtta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47627357 tcactatgtgcccacaactctatttgtatgtccttgaacttgttctatagctaccatccttgccatgccaaaatcagagatttttggattcatattgtta 47627258  T
Q  115 tctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatcttcatgaaggtaaagaattcctcgagcaatccctttaatgatat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47627257 tctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatcttcatgaaggtaaagaattcctcgagcaatccctttaatgatat 47627158  T
Q  215 tataccgttcaggccaagttaattgcctttgcttc 249  Q
    |||||||||||||||||||||||||| ||||||||    
T  47627157 tataccgttcaggccaagttaattgcttttgcttc 47627123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 212
Target Start/End: Complemental strand, 47584416 - 47584262
Alignment:
Q  58 tctatagctaccatccttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatct 157  Q
    ||||||| ||| || || |||||||||||||| || |||||||| ||||| ||  ||||||  |  |||||||| ||||||| |||||| ||||| || |    
T  47584416 tctatagatacaattctagccatgccaaaatctgatatttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattt 47584317  T
Q  158 tgagacgagaatcttcatgaaggtaaagaattcctcgagcaatccctttaatgat 212  Q
    |||| |||||||||||||| |||||||||||||| || ||||| ||||| |||||    
T  47584316 tgaggcgagaatcttcatggaggtaaagaattccacgggcaattcctttgatgat 47584262  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 212
Target Start/End: Complemental strand, 47574698 - 47574562
Alignment:
Q  76 gccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatcttcat 175  Q
    |||||||||||||| || |||||||||||||||||   |||||  || |||| ||| ||||| | |||||| ||||| || ||||| |||||||||||||    
T  47574698 gccatgccaaaatctgatatttttggattcatattaccatctaacaggacatcgctaggtttcagatcacgatgtatgattttgaggcgagaatcttcat 47574599  T
Q  176 gaaggtaaagaattcctcgagcaatccctttaatgat 212  Q
    | || ||||||||||| || ||||  ||||| |||||    
T  47574598 ggagataaagaattccacgggcaactcctttgatgat 47574562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 192
Target Start/End: Complemental strand, 47593147 - 47593025
Alignment:
Q  70 atccttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaat 169  Q
    ||||| ||||| |||||||| || ||||| ||||||||||| | ||| || |||||||| || ||||| | ||| || |||||||  |||||||||||||    
T  47593147 atcctagccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaat 47593048  T
Q  170 cttcatgaaggtaaagaattcct 192  Q
     |||||| |  ||||||||||||    
T  47593047 attcatgcaaataaagaattcct 47593025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 47698521 - 47698431
Alignment:
Q  17 actatgtgcccacaactctatttgtatgtccttgaacttgttctatagctaccatccttgccatgccaaaatcagagatttttggattcat 107  Q
    ||||||| || |||| ||||||||||  |||| || |||| |||| ||| ||||| ||||||||||| |||||||| ||||| ||||||||    
T  47698521 actatgttccaacaattctatttgtacttcctcgatcttgatctagagccaccattcttgccatgccgaaatcagatattttaggattcat 47698431  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 6525288 - 6525231
Alignment:
Q  163 cgagaatcttcatgaaggtaaagaattcctcgagcaatccctttaatgatattatacc 220  Q
    |||||||| ||||||||||||||||||||||||||| | |||  |||||| |||||||    
T  6525288 cgagaatcctcatgaaggtaaagaattcctcgagcagtacctacaatgattttatacc 6525231  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 238
Target Start/End: Original strand, 36067065 - 36067233
Alignment:
Q  70 atccttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaat 169  Q
    |||||||||| ||||||||| || || |||| |||||| |||| ||| |  | ||  ||||| ||||||| ||||| |||||| || || ||| ||||||    
T  36067065 atccttgccaagccaaaatctgatatctttgcattcattttgtcatccaacaaaatgttgctgggtttaagatcacagtgtatgatttttagatgagaat 36067164  T
Q  170 cttcatgaaggtaaagaattcctcgagcaatccctttaatgatattataccgttcaggccaagttaatt 238  Q
    | ||||| || |||||||| ||||| ||||||||| | || || || || ||| || ||||||||||||    
T  36067165 cctcatgtagataaagaatacctcgtgcaatccctcttataatcttgtagcgtgcatgccaagttaatt 36067233  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 236
Target Start/End: Original strand, 21968250 - 21968419
Alignment:
Q  67 accatccttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgag 166  Q
    ||||||| |||||  |||||||| || ||||| ||| ||||||| | |||||  |||| ||| || ||||| | ||| || |||||||  ||||| ||||    
T  21968250 accatccgtgccaaaccaaaatctgaaattttaggaatcatattttcatctaatagaatattactaggtttgagatcgcgatgtataactttgagtcgag 21968349  T
Q  167 aatcttcatgaaggtaaagaattcctcgagcaatccctttaatgatattataccgttcaggccaagttaa 236  Q
    |||  ||||| |  |||||||||||||||||||| |||  |||||| ||| | ||||||  |||||||||    
T  21968350 aatgctcatgcaaataaagaattcctcgagcaattcctccaatgatgttaaagcgttcaacccaagttaa 21968419  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 22086149 - 22086267
Alignment:
Q  82 ccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatcttcatgaaggt 181  Q
    |||||||| || ||| | ||| ||||||| | |||||  |||| ||| |||||||| | |||||| |||||||  ||||| ||||||| |||||| |  |    
T  22086149 ccaaaatctgaaattctaggaatcatattttcatctaatagaatattacttggtttgagatcacgatgtataactttgagtcgagaatgttcatgcaaat 22086248  T
Q  182 aaagaattcctcgagcaat 200  Q
    |||||||||||| ||||||    
T  22086249 aaagaattcctccagcaat 22086267  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 28829061 - 28829146
Alignment:
Q  127 ttgcttggtttaatatcacggtgtataatcttgagacgagaatcttcatgaaggtaaagaattcctcgagcaatccctttaatgat 212  Q
    ||||||| ||||| |||||||||||||||    || ||||||||||||||||| |||||||  ||||||| ||| |||| ||||||    
T  28829061 ttgcttgctttaagatcacggtgtataatgcgtagtcgagaatcttcatgaagataaagaacacctcgagtaataccttgaatgat 28829146  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 28854668 - 28854807
Alignment:
Q  73 cttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatctt 172  Q
    ||||||||||| ||||| || || || | |||||| || | |||||  |||| ||||| || ||| | |||||||||||||||    || |||||||| |    
T  28854668 cttgccatgccgaaatctgatatcttagcattcatgttttcatctaagagaatattgcctgctttgagatcacggtgtataatgcgtagtcgagaatcct 28854767  T
Q  173 catgaaggtaaagaattcctcgagcaatccctttaatgat 212  Q
    ||||||| || ||||  ||||||||||| |||||||||||    
T  28854768 catgaagatagagaacacctcgagcaatacctttaatgat 28854807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 28860026 - 28860165
Alignment:
Q  73 cttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatctt 172  Q
    ||||||||||||||||| || || || | |||||| |  |  ||||| ||||  ||||||| ||| | ||| |||||||||||    || |||||||| |    
T  28860026 cttgccatgccaaaatctgaaatcttagcattcatgtcttcgtctaggagaatgttgcttgctttgagatcgcggtgtataatacgcagtcgagaatcct 28860125  T
Q  173 catgaaggtaaagaattcctcgagcaatccctttaatgat 212  Q
    |||||||||||||||  ||||||||||| |||| ||||||    
T  28860126 catgaaggtaaagaacgcctcgagcaataccttgaatgat 28860165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 2662479 - 2662539
Alignment:
Q  73 cttgccatgccaaaatcagagatttttggattcatattgttatctagaagaacattgcttg 133  Q
    |||||||| ||||| ||||| |||||||||||||| | |  ||||| ||||||||||||||    
T  2662479 cttgccattccaaagtcagaaatttttggattcatttcgccatctaaaagaacattgcttg 2662539  T

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