View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_low_31 (Length: 254)
Name: NF17838_low_31
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_low_31 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 3449207 - 3449427
Alignment:
| Q |
17 |
gttggtgacctggaaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttggagtgggtcggtggtgattgcggtggtg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3449207 |
gttggtgacctggaaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttggagtgggtcggtggtgattgcggtggtg |
3449306 |
T |
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| Q |
117 |
ttgtagactgtgacggtggtgtcttgtgccattgggaacaaggtgtttgtgaaaatgcgtagcagaagagtgtagtgaaattaattgttgaaatgcgtag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3449307 |
ttgtagactgtgacggtggtgtcttgtgccattgggaacaaggtgtttgtgaaaatgcgtagcagaagagtgtagtgaaattaattgttgaaatgcgtag |
3449406 |
T |
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| Q |
217 |
gtgataagtgatgtatggaat |
237 |
Q |
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|||| |||||||| ||||||| |
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| T |
3449407 |
gtgaaaagtgatgcatggaat |
3449427 |
T |
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Target: scaffold0147 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 237
Target Start/End: Original strand, 1 - 208
Alignment:
| Q |
30 |
aaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttggagtgggtcggtggtgattgcggtggtgttgtagactgtga |
129 |
Q |
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| T |
1 |
aaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttggagtgggtcggtggtgattgcggtggtgttgtagactgtga |
100 |
T |
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| Q |
130 |
cggtggtgtcttgtgccattgggaacaaggtgtttgtgaaaatgcgtagcagaagagtgtagtgaaattaattgttgaaatgcgtaggtgataagtgatg |
229 |
Q |
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| T |
101 |
cggtggtgtcttgtgccattgggaacaaggtgtttgtgaaaatgcgtagcagaagagtgtagtgaaattaattgttgaaatgcgtaggtgaaaagtgatg |
200 |
T |
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| Q |
230 |
tatggaat |
237 |
Q |
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| T |
201 |
catggaat |
208 |
T |
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Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 46205289 - 46205409
Alignment:
| Q |
18 |
ttggtgacctggaaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttggagtgggtcggtggtgattgcggtggtgt |
117 |
Q |
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|||||||| |||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
46205289 |
ttggtgacgtggagaattgcgccgccacagagggtttgggtgagggatagtttgaatgagtatggggtttagagtgggtcggtggtgattgcggtggttt |
46205388 |
T |
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| Q |
118 |
tgtagactgtgacggtggtgt |
138 |
Q |
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| T |
46205389 |
tgtagactgtgacagtggtgt |
46205409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 41587679 - 41587560
Alignment:
| Q |
18 |
ttggtgacctggaaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttggagtgggtcggtggtgattgcggtggtgt |
117 |
Q |
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|||||||| |||| |||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
41587679 |
ttggtgacgtggagaattgcgccgccgcagagggtttg-gtgagggatagtttgaatgagtatggggtttagagtgggtcggtggtgattgcggtggttt |
41587581 |
T |
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| Q |
118 |
tgtagactgtgacggtggtgt |
138 |
Q |
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| T |
41587580 |
tgtagactgtgacggtggtgt |
41587560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 35038901 - 35038781
Alignment:
| Q |
18 |
ttggtgacctggaaaattgcgccgccacggagggtttgtgtgagggatagtttgaatgagtatggggtttggagtgggtcggtggtgattgcggtggtgt |
117 |
Q |
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|||||||| |||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | | |
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| T |
35038901 |
ttggtgacgtggagaattgcgccgccgcatagggtttgggtgagggatagtttgaatgagtatggggtttagagtgggtcggtggtgattgcagtgattt |
35038802 |
T |
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| Q |
118 |
tgtagactgtgacggtggtgt |
138 |
Q |
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||||||||||||||||||||| |
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| T |
35038801 |
tgtagactgtgacggtggtgt |
35038781 |
T |
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