View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_low_32 (Length: 249)
Name: NF17838_low_32
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 42566478 - 42566694
Alignment:
| Q |
18 |
ggcatggaaatatttaacaataataaagttagtattatgacaaagaaaaacctacctgcaacctcaataatccaaaacctgcaactacacctttcattcc |
117 |
Q |
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| T |
42566478 |
ggcatggaaatatttaacaataataaagttagtattatgacaaagaaaaacctacctgcaacctcaataatccaaaacctgcaaccgcacctttcattcc |
42566577 |
T |
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| Q |
118 |
tccctataatataatcatgggatgggatagactttcggtatttaattttgatcaaaatcttctattataatttgaattatatctttctaagatttgatta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42566578 |
tccctataatataatcatgggatgggatagactttcggtatttaattttgatcaaaatcttctattataatttgaattatatctttctaagatttgatta |
42566677 |
T |
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| Q |
218 |
cttttaacgagtgcatt |
234 |
Q |
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||||||||||||||||| |
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| T |
42566678 |
cttttaacgagtgcatt |
42566694 |
T |
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