View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_low_5 (Length: 464)
Name: NF17838_low_5
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_low_5 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 53 - 464
Target Start/End: Complemental strand, 5135560 - 5135148
Alignment:
| Q |
53 |
aacggtgtaaggcgctctcattatagaccctgaatgatcagctatttgaaccgtactatgagttataacattcat--gtcttttaacaaattggacagga |
150 |
Q |
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| T |
5135560 |
aacggtgtaaggcgctctcattatagaccctgaatgatcagctatttgaaccgtattatgagttataacattcatatgtcttctaacaaattggacagga |
5135461 |
T |
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| Q |
151 |
cagtcttcaacctagtgtagcaatgagttcattcaccataacatttgtctctaaggttgtgacttcttacttttcaccaatatgttggatatgtatactt |
250 |
Q |
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| T |
5135460 |
cagtcttcaacctagtttagcaatgagttcattcaccataacatttgtctctaaggttgtgacttcttacttttcaccaatatgttggatatgtatactt |
5135361 |
T |
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| Q |
251 |
gaaacggttgatcagtttttgaaagggggtatgtgctcaccataaatctttccttgattgcgattattgacaagagattatttagctcaatgtgggacag |
350 |
Q |
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| T |
5135360 |
gaaacggttgatcagtttttgaaagggggtaagtgcccaccataaatctttccttgattgcgataattgacaagacattatttagctcaatgtgggacag |
5135261 |
T |
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| Q |
351 |
ttttgctaccttcctctccaattcacaattagggcacaccctaaactagttgaatgagtgtgcagtttggaagtcaccaaggagtaagctgcacagaaga |
450 |
Q |
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| T |
5135260 |
ttatgctaccttcctctccaattcacaattaggg-gtactctaaactagttgaatgagtgtgcagtttggaagtcaccaaggagtaagctgcacagaaga |
5135162 |
T |
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| Q |
451 |
ggagtttgcagaaa |
464 |
Q |
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| T |
5135161 |
ggagtttgcagaaa |
5135148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 5100338 - 5099907
Alignment:
| Q |
1 |
ctgcagaaaccttcataactttatctttgagttaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatgatcagctatttg |
100 |
Q |
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| T |
5100338 |
ctgcagaaaccttcataactttattttttagtaaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatgatcagctatttg |
5100239 |
T |
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| Q |
101 |
aaccgtactatgagttataacattcat--gtcttttaacaaattggacaggacagtcttcaacctagtgtagcaatgagttcattcaccataacatttgt |
198 |
Q |
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| T |
5100238 |
aaccgtactatgagttataacattcatatgtcttttaacaaattggacaggacagtcttcaacctagtttagcaatgtgttcattcaccataacatttgt |
5100139 |
T |
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| Q |
199 |
ctctaaggttgtgacttcttacttttcaccaatatgttggatatgtatacttgaaacggttgatcagtttttgaaaggggg-tatgtgctcaccataaat |
297 |
Q |
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| T |
5100138 |
ctctaaggttgtgacttcttacttttcaccaatatgttggatatgaatacttgaaacggttgatcagtttttgaaagggggttaagtgcccaccataaat |
5100039 |
T |
|
| Q |
298 |
ctttccttgattgcgattattgacaagagattatttagctcaatgtgggacagttttgctaccttcctctccaattcacaattagggcacaccctaaact |
397 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||| ||| |||| ||||||||||| || |||||||||||||| | ||||||||||| |
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| T |
5100038 |
ctttccttgattgcgattattgacaagagagtattt-gctcaatgtaggagagttatgctaccttccacttcaattcacaattagtg--caccctaaact |
5099942 |
T |
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| Q |
398 |
agttgaatgagtgtgcagtttggaagtcaccaagg |
432 |
Q |
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| T |
5099941 |
agttgaatgagtgtgcggtttggaagccaccaagg |
5099907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 327 - 444
Target Start/End: Original strand, 5057851 - 5057968
Alignment:
| Q |
327 |
attatttagctcaatgtgggacagttttgctaccttcctctccaattcacaattagggcacaccctaaactagttgaatgagtgtgcagtttggaagtca |
426 |
Q |
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| T |
5057851 |
attattttggtcaatgtgggacagatatactaccttccactccaattcacaattagggcacaccctaaactagttgaatgagtgtgcagtttggaagcca |
5057950 |
T |
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| Q |
427 |
ccaaggagtaagctgcac |
444 |
Q |
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| T |
5057951 |
ccaagaagtaggctgcac |
5057968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 4 - 179
Target Start/End: Original strand, 2939549 - 2939723
Alignment:
| Q |
4 |
cagaaaccttcataactttatctttgagttaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatgatcagctatttgaac |
103 |
Q |
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| T |
2939549 |
cagaagccttcataaccttatttttgagtaaacatttattttggtccctaacagtgt--gtcgctcacactatagaccctgaatgatcagctatttgaac |
2939646 |
T |
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| Q |
104 |
cgtactatgagttataacattcatg-tcttttaacaaattggacaggacagtcttcaacctagtgtagcaatgagtt |
179 |
Q |
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| T |
2939647 |
catactacgagctataacatttatgtttttttaacaaattgcacaggacagacttcaatctagtttagtaataagtt |
2939723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 5242065 - 5241981
Alignment:
| Q |
14 |
cataactttatctttgagttaacatttatttttgtccctaacggtgtaaggcgctctcattatagaccctgaatgatcagctatt |
98 |
Q |
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| T |
5242065 |
cataactttatttttgattgaacaattattttggtccctaatagtgtgaggcactctcactatagtccttgaatgatcagctatt |
5241981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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