View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17838_low_6 (Length: 461)

Name: NF17838_low_6
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17838_low_6
NF17838_low_6
[»] chr5 (8 HSPs)
chr5 (10-232)||(35951901-35952126)
chr5 (10-210)||(33140280-33140481)
chr5 (373-461)||(35952558-35952646)
chr5 (36-168)||(15471076-15471210)
chr5 (321-378)||(35952139-35952196)
chr5 (28-162)||(14144877-14145016)
chr5 (28-190)||(29790572-29790735)
chr5 (269-377)||(35950943-35951053)
[»] chr3 (10 HSPs)
chr3 (10-245)||(26445866-26446103)
chr3 (18-238)||(570896-571120)
chr3 (10-111)||(29952832-29952935)
chr3 (10-111)||(30001986-30002089)
chr3 (28-205)||(45483759-45483936)
chr3 (28-168)||(46091800-46091942)
chr3 (28-198)||(33087858-33088030)
chr3 (39-176)||(39650424-39650564)
chr3 (28-156)||(28521495-28521625)
chr3 (30-159)||(28050724-28050856)
[»] chr8 (8 HSPs)
chr8 (10-245)||(29191070-29191308)
chr8 (28-196)||(33828203-33828374)
chr8 (28-164)||(16366783-16366921)
chr8 (36-198)||(25246963-25247127)
chr8 (28-245)||(41877364-41877586)
chr8 (95-194)||(26534376-26534476)
chr8 (28-168)||(42664143-42664284)
chr8 (96-180)||(10208011-10208093)
[»] chr1 (4 HSPs)
chr1 (10-240)||(15962254-15962488)
chr1 (31-165)||(44508214-44508350)
chr1 (93-203)||(7093514-7093624)
chr1 (28-196)||(31067077-31067248)
[»] chr4 (9 HSPs)
chr4 (28-245)||(55250388-55250612)
chr4 (12-167)||(29857378-29857534)
chr4 (35-221)||(47668905-47669095)
chr4 (30-198)||(1101079-1101249)
chr4 (31-122)||(46964029-46964120)
chr4 (67-189)||(1838565-1838690)
chr4 (28-164)||(20447758-20447895)
chr4 (116-203)||(34028080-34028167)
chr4 (67-168)||(20991335-20991436)
[»] chr2 (11 HSPs)
chr2 (28-192)||(18061118-18061285)
chr2 (10-193)||(43559627-43559811)
chr2 (28-205)||(19865859-19866037)
chr2 (28-205)||(19870760-19870938)
chr2 (28-205)||(19875661-19875839)
chr2 (28-190)||(29686129-29686294)
chr2 (104-245)||(5608435-5608577)
chr2 (28-198)||(45040068-45040240)
chr2 (130-193)||(33226775-33226840)
chr2 (36-83)||(5608979-5609026)
chr2 (28-89)||(21017212-21017273)
[»] chr7 (6 HSPs)
chr7 (28-190)||(19910102-19910264)
chr7 (10-198)||(6036753-6036944)
chr7 (36-196)||(47235870-47236032)
chr7 (97-210)||(34821148-34821262)
chr7 (20-91)||(28086240-28086311)
chr7 (76-163)||(27705385-27705473)
[»] chr6 (3 HSPs)
chr6 (10-198)||(13325488-13325677)
chr6 (34-198)||(4017040-4017207)
chr6 (129-176)||(20921333-20921381)
[»] scaffold0257 (1 HSPs)
scaffold0257 (31-163)||(16452-16586)
[»] scaffold0258 (1 HSPs)
scaffold0258 (36-195)||(18081-18242)
[»] scaffold0005 (1 HSPs)
scaffold0005 (12-196)||(270235-270420)
[»] scaffold0406 (1 HSPs)
scaffold0406 (36-195)||(12650-12811)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 35951901 - 35952126
Alignment:
Q  10 cgaagaatataaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatata 107  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||  |||||||||||||    
T  35951901 cgaagaaaataaaagttaaacaatagttatttataaaagttgagctttatagagttgtaagaactaaaatttatccataattgacactaaactaaatata 35952000  T
Q  108 ttatcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaatagggtagctatatataaatctatacc 206  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| || ||||||| ||||||     
T  35952001 ttatcaatatttgttcaatatcatctctttttaaaccaacaaaattgtttggagtagccaaataatatatcaatggagtagttacatataaacctatact 35952100  T
Q  207 aatttttaagtttttcttatgctttt 232  Q
    |||||||||||||||||||| |||||    
T  35952101 aatttttaagtttttcttatcctttt 35952126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 33140280 - 33140481
Alignment:
Q  10 cgaagaatataaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaactaaactaaatatatt 109  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||| | |||||||||||||||| ||   ||||||||||||    
T  33140280 cgaagaaaataaaagttaaacaatagttatttataaaatttgagctttatggagttgtaagaacttaaatttatccataattgacactactaaatatatt 33140379  T
Q  110 atcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaatagggtagctatatataaatctataccaa 208  Q
    ||| ||| || | ||||||||||||| |||||||||| ||||||||||||||||||| |||||||||| ||| || || ||| ||||||| |||||||||    
T  33140380 atcgatacttgtgcaatatcatctctctttaaaccaataaaattgtttggagtagccaaataatatattaatgggataactacatataaacctataccaa 33140479  T
Q  209 tt 210  Q
    ||    
T  33140480 tt 33140481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 373 - 461
Target Start/End: Original strand, 35952558 - 35952646
Alignment:
Q  373 aacatactaagatgttcaaatagtaaagtgtgccgtttaattttacattttgtcggtcaataacattttgtggtccatgtttatttaac 461  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35952558 aacataataagatgttcaaatagtaaagtgtgccgtttaattttacattttgtcggtcaataacattttgtggtccatgtttatttaac 35952646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 168
Target Start/End: Original strand, 15471076 - 15471210
Alignment:
Q  36 ttatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatatattatcaatattttttcaatatcatct 133  Q
    |||||||||||||||||||| ||  ||||| | |||||| |||||||||||||||| ||  ||||||||||| |||||||||||||||  | ||||||||    
T  15471076 ttatttataaaagttgagctctaatgagtttttagaattcaaatttatccataattgacactaaactaaatagattatcaatatttttgtattatcatct 15471175  T
Q  134 ctttttaaaccaacaaaattgtttggagtagccaa 168  Q
    || ||| ||||||||||||||||||||||| ||||    
T  15471176 ctgttttaaccaacaaaattgtttggagtaaccaa 15471210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 35952139 - 35952196
Alignment:
Q  321 tgcttgaacggttgaacattagttagttgtgtcatagcaaataatgtgatagaacata 378  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35952139 tgcttgaacggttgaacattagttagttgtgtcatagcgaataatgtgatagaacata 35952196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 14144877 - 14145016
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataatta-----actaaactaaatatattatcaatatttttt 122  Q
    ||||||| ||||||||||||||| |||| ||  ||||| | |||  | |||||||||||||||||     ||||||||||||| |||||||||||||||     
T  14144877 aacaatacttatttataaaagttaagctctaaggagtttttagaggtcaaatttatccataattattgacactaaactaaatagattatcaatattttta 14144976  T
Q  123 caatatcatctctttttaaaccaacaaaattgtttggagt 162  Q
     |||||||||| | ||| ||||||||||||| ||||||||    
T  14144977 taatatcatctatgttttaaccaacaaaattatttggagt 14145016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 29790735 - 29790572
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataatt--aactaaactaaatatattatcaatattttttcaa 125  Q
    ||||||||||||||||||||||||  ||||||  |||| ||| || | |||||||   ||||||   |||| |||||||| ||||| | |||||||  ||    
T  29790735 aacaataattatttataaaagttgtactttatgaagttttaacaagtcaaatttacttataattgacactagactaaatagattataagtattttt--aa 29790638  T
Q  126 tatcatctctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaatagggtagcta 190  Q
     |||||||||||||||||||||||||||||||||||| ||| |||||||||| |||  ||||||||    
T  29790637 aatcatctctttttaaaccaacaaaattgtttggagtggccaaataatatattaatgtggtagcta 29790572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 35950943 - 35951053
Alignment:
Q  269 catctcagcactcctttgttcagtgtttgttctttagtaattttcaaatttgtgcttgaacggttgaacattag--ttagttgtgtcatagcaaataatg 366  Q
    ||||||| |||| ||||||| |||| ||||||||||||| | ||  | ||||||||||| || ||||||| |||  |||| ||||| ||| |||||||||    
T  35950943 catctcaacacttctttgttgagtgcttgttctttagtattattacattttgtgcttgatcgattgaacaatagatttagatgtgttataccaaataatg 35951042  T
Q  367 tgatagaacat 377  Q
    | |||||||||    
T  35951043 ttatagaacat 35951053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 26446103 - 26445866
Alignment:
Q  10 cgaagaatataaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataatt--aactaaactaaatata 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||   || ||||||||||||    
T  26446103 cgaagaaaataaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaacttaaatttatccataattgacaccaaactaaatata 26446004  T
Q  108 ttatcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagtagcca-ataatatatcaatagggtagctatatataaatctatacc 206  Q
    |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||  |||||||| ||||||| |||||||    
T  26446003 ttatcaatatttgtgcaatat-atctctttttaaaccaacaaaattgtttggagtagccagataatatattaatgaggtagctacatataaacctatacc 26445905  T
Q  207 aatttttaagtttttcttatgcttttcgggtagccaatg 245  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  26445904 aattttcaagtttttcttatgcttttggggtagccaatg 26445866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 571120 - 570896
Alignment:
Q  18 ataaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataatt--aactaaactaaatatattatca-- 113  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||||||||| || | ||||||||||||||||   |||| ||||||||||||||||      
T  571120 ataaaagttaaacaattgttatttataatagttgagctttatagagttgtaataacttaaatttatccataattgacactagactaaatatattatcaat 571021  T
Q  114 atattttttcaatatcatctctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaatagggtagctatatataaatctataccaatttt 212  Q
    |||||| | ||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| ||| ||||| ||| ||||||| |||||||||||||    
T  571020 atatttatgcaatatcatctctctttaaaccaacaaaattatttggagtagccaaataatatattaat-gggtatctacatataaacctataccaatttt 570922  T
Q  213 taagtttttcttatgcttttcgggta 238  Q
     ||||||||||| | ||||| |||||    
T  570921 caagtttttcttcttcttttggggta 570896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 29952832 - 29952935
Alignment:
Q  10 cgaagaatataaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataat--taactaaactaaatata 107  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | |||||||||||||||  | |||||||||||||||    
T  29952832 cgaagaaaataaaagttaaacaataattatttataaaatttgagctttatggagttgtatgaacttaaatttatccataattgtcactaaactaaatata 29952931  T
Q  108 ttat 111  Q
    ||||    
T  29952932 ttat 29952935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 30001986 - 30002089
Alignment:
Q  10 cgaagaatataaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataat--taactaaactaaatata 107  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | |||||||||||||||  | |||||||||||||||    
T  30001986 cgaagaaaataaaagttaaacaataattatttataaaatttgagctttatggagttgtatgaacttaaatttatccataattgtcactaaactaaatata 30002085  T
Q  108 ttat 111  Q
    ||||    
T  30002086 ttat 30002089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 205
Target Start/End: Original strand, 45483759 - 45483936
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaa--ctaaactaaatatattatcaatattttttcaa 125  Q
    |||||||||||||||||||||||| ||| |||  |||| ||||      |||||||| |||||| |  |||||||||||| |||||| ||||||| |  |    
T  45483759 aacaataattatttataaaagttgtgctctatgaagttttaagtc----aatttatctataattgatactaaactaaatagattatctatattttattga 45483854  T
Q  126 tatcatctctttttaaaccaac-aaaattgtttggagtagcc-aataatatatcaatagggtagctatatataaatctatac 205  Q
    ||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| ||| ||| ||||||    
T  45483855 tatcatccctctttaaaccaacaaaaattgtttggagtagccaaataatatatcaatggggtagctacatacaaaactatac 45483936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 46091800 - 46091942
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatatattatcaatattttttcaa 125  Q
    ||||||| ||||||||||| |||||||| ||  ||||  | |||| | |||||||||||||||||||  ||||||||||  |||||||||||||||  ||    
T  46091800 aacaatagttatttataaatgttgagctctaaggagtatttagaagtcaaatttatccataattaacactaaactaaatggattatcaatatttttataa 46091899  T
Q  126 tatcatctctttttaaaccaacaaaattgtttggagtagccaa 168  Q
    ||| |||| | ||| |||||| |||||||||||||||||||||    
T  46091900 tattatctatgttttaaccaataaaattgtttggagtagccaa 46091942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 33087858 - 33088030
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataatt--aactaaactaaatatattatcaatattttttcaa 125  Q
    ||||||||||||||||||||||||||||||||  |||| |||||| |  |||||||| ||||||   ||||||||||||| |||||||||||||| | ||    
T  33087858 aacaataattatttataaaagttgagctttatgaagttttaagaagt-caatttatctataattgacactaaactaaatagattatcaatattttattaa 33087956  T
Q  126 tatcatctctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaatagggtagctatatataaa 198  Q
    ||||| |  | ||| ||| |||||||||||||| || |||| |||||||||| |||  | || |||||||||||    
T  33087957 tatcacccttctttgaactaacaaaattgtttgaagaagccaaataatatattaatgagataactatatataaa 33088030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 39 - 176
Target Start/End: Complemental strand, 39650564 - 39650424
Alignment:
Q  39 tttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatatattatcaatattttttcaatatcatctctt 136  Q
    |||||||||||||| || | || |||| |||||| | ||||| ||| |||||| ||  |||| |||||| |||||||||||||| | ||||| ||| ||     
T  39650564 tttataaaagttgaactctgtaaagttttaagaagtcaaattcatctataattgacgctaaattaaatagattatcaatattttattaatattatccctc 39650465  T
Q  137 tttaaaccaacaaaattgtttggagtagccaa-taatatat 176  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  39650464 tttaaaccaacaaaattgtttggagtagccaagtaatatat 39650424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 28521625 - 28521495
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaa--ctaaactaaatatattatcaatattttttcaa 125  Q
    ||||||| |||| || |||| ||||||| |||  | || |||||| | |||||||| ||||||| |  |||||||||||| |||||||||||| ||  ||    
T  28521625 aacaatagttatctacaaaaattgagctctatgaaattttaagaagtcaaatttattcataattgatactaaactaaatagattatcaatattattataa 28521526  T
Q  126 tatcatctctttttaaaccaacaaaattgtt 156  Q
    ||| |||||| ||||||||||||||||||||    
T  28521525 tattatctctctttaaaccaacaaaattgtt 28521495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 28050724 - 28050856
Alignment:
Q  30 caataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatatattatcaatattttttcaata 127  Q
    ||||| |||| ||||||||||||| | |||  || | |||||| | ||||||||| |||||  ||  ||||||||||| |||||| ||||||||| | ||    
T  28050724 caatagttatctataaaagttgagttctatgaagatttaagaaattaaatttatctataatagacattaaactaaatagattatccatatttttttatta 28050823  T
Q  128 tcatctctttttaaacc-aacaaaattgtttgg 159  Q
    |||||||| ||| |||| |||||| ||||||||    
T  28050824 tcatctctctttgaaccaaacaaatttgtttgg 28050856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 2e-75; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 29191070 - 29191308
Alignment:
Q  10 cgaagaatataaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataatt--aactaaactaaatata 107  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||   || ||||||||||||    
T  29191070 cgaagaaaataaaagttaaacaatagttagttataaaagttgagctttatagagttgtaagaacttaaatttatccataattgacaccaaactaaatata 29191169  T
Q  108 ttatcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagta-gccaataatatatcaatagggtagctatatataaatctatacc 206  Q
     ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||| | ||||||| ||||||| |||||||    
T  29191170 ctatcaatatttgtgcaatatcatctctttttaaaccaacaaaattgtttggagtaggcaaataatatattaatggagtagctacatataaacctatacc 29191269  T
Q  207 aatttttaagtttttcttatgcttttcgggtagccaatg 245  Q
    |||||| |||||||||||| |||||| ||||||||||||    
T  29191270 aattttcaagtttttcttaggcttttggggtagccaatg 29191308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 28 - 196
Target Start/End: Complemental strand, 33828374 - 33828203
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatatattatcaatattttttcaa 125  Q
    ||||||| |||||||||||||||||||| ||  ||||| | |||| | |||||||||||||||| ||  ||||||||||| |||||||||||||||  ||    
T  33828374 aacaatagttatttataaaagttgagctctaaggagtttttagaagtcaaatttatccataattgacactaaactaaatagattatcaatatttttataa 33828275  T
Q  126 tatcatctctttttaaaccaacaaaattgtttggagtag-ccaataatatatcaatagggtagctatatata 196  Q
    |||||||| | ||| |||||||||||||||||||||||| | || ||||| | ||| ||||||||| |||||    
T  33828274 tatcatctttattttaaccaacaaaattgtttggagtagtcaaaaaatatcttaatggggtagctacatata 33828203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 16366783 - 16366921
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatatattatcaatattttttcaa 125  Q
    ||||||| |||||||||||||||||||  ||   |||| | | |||| ||||||||| |||||||||  ||||||||||| |||||||||||||||  ||    
T  16366783 aacaatagttatttataaaagttgagccctaagaagtttttaaaattcaaatttatctataattaacactaaactaaatagattatcaatatttttataa 16366882  T
Q  126 tatcatctctttttaaaccaacaaaattgtttggagtag 164  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  16366883 tatcatctctattttaaccaacaaaattgtttggagtag 16366921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 198
Target Start/End: Original strand, 25246963 - 25247127
Alignment:
Q  36 ttatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatatattatcaatattttttcaatatcatct 133  Q
    |||||| |||||| |||| | ||| ||||| ||||||   ||||||||| |||||| ||  ||||||||||||||||||||| ||| || ||||| || |    
T  25246963 ttatttgtaaaagatgagttctatggagttttaagaagacaaatttatctataattgacactaaactaaatatattatcaatttttgtt-aatataatat 25247061  T
Q  134 ctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaatagggtagctatatataaa 198  Q
    || |||||| ||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||    
T  25247062 ctctttaaatcaacaaaattgtttggagtagccaaataatatattaatggggtagctatatataaa 25247127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 245
Target Start/End: Complemental strand, 41877586 - 41877364
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataa--ttaac--taaactaaatatattatcaatattttttc 123  Q
    |||||||||||||||||||||||||| |||||  |||| |||||| | ||||||||  |||   || ||  ||||||||||| ||||| |||||||| |     
T  41877586 aacaataattatttataaaagttgagttttatcaagttttaagaagtcaaatttatatatatacttgacattaaactaaataaattattaatattttatt 41877487  T
Q  124 aatatcatctctttttaaaccaacaaaattgtttggagtagccaa-taatatatcaatagggtagctatatataaatctataccaatt-tttaagttttt 221  Q
    || ||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||||||||| ||| ||| |||||  |||| || ||| ||||    
T  41877486 aagatcgtctctttttaa-ccaacaaaattgtttggagtagccaagtaatatattaatggggtagctacatacaaaactatattaattattcaagctttt 41877388  T
Q  222 cttatgcttttcgggtagccaatg 245  Q
     || | ||||| ||||||||||||    
T  41877387 ttttttcttttggggtagccaatg 41877364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 26534476 - 26534376
Alignment:
Q  95 taaactaaatatattatcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagt-agccaataatatatcaatagggtagctatat 193  Q
    ||||||||||| |||||||||||||||  |||| ||||||| ||| |||||||||||||||||||||| | | |||||||| | ||| ||||||||||||    
T  26534476 taaactaaatagattatcaatatttttataataccatctctattttaaccaacaaaattgtttggagtgaccaaataatatcttaatggggtagctatat 26534377  T
Q  194 a 194  Q
    |    
T  26534376 a 26534376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 42664143 - 42664284
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataatt--aactaaactaaatatattatcaatattttttcaa 125  Q
    ||||||||||||||||||||||||  || |||  |||| ||| || | ||||||||  ||||||   ||||||||||||| ||||| | |||||||| ||    
T  42664143 aacaataattatttataaaagttgtactctatgaagttttaaaaagtcaaatttatttataattgacactaaactaaatagattataagtatttttt-aa 42664241  T
Q  126 tatcatctctttttaaaccaacaaaattgtttggagtagccaa 168  Q
     |||| | ||||||||||||||||||||||||||||| |||||    
T  42664242 aatcaccactttttaaaccaacaaaattgtttggagtggccaa 42664284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 10208011 - 10208093
Alignment:
Q  96 aaactaaatatattatcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagtag-ccaataatatatcaat 180  Q
    |||||||||| ||||||||||||||   ||||  |||||| |||||||||||||||||||||||||||| | || |||||||||||    
T  10208011 aaactaaataaattatcaatatttt---aatagtatctctctttaaaccaacaaaattgtttggagtagtcaaacaatatatcaat 10208093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 15962488 - 15962254
Alignment:
Q  10 cgaagaatataaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataatt--aactaaactaaatata 107  Q
    ||||||| ||||||||||||| ||| ||||||||||| |||||||||||| |||||||||||| | |||| |||||||||||   |||||||||||||||    
T  15962488 cgaagaaaataaaagttaaaccatagttatttataaatgttgagctttatggagttgtaagaacttaaatgtatccataattgacactaaactaaatata 15962389  T
Q  108 ttatcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaatagggtagctatatataaatctatacc 206  Q
    |||| ||||||| | ||||||| ||||  |||||||||||||||||| |||||||| || |||||||||| |||  |||||||| |||||||  ||||||    
T  15962388 ttatgaatatttgtgcaatatcttctccctttaaaccaacaaaattgattggagtaaccaaataatatattaatgaggtagctacatataaacatatacc 15962289  T
Q  207 aatt-tttaagtttttcttatgcttttcgggtagc 240  Q
    |||| || |||||||| || | ||||| |||||||    
T  15962288 aattattcaagttttttttcttcttttggggtagc 15962254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 165
Target Start/End: Original strand, 44508214 - 44508350
Alignment:
Q  31 aataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataatt--aactaaactaaatatattatcaatattttttcaatat 128  Q
    ||||||||||||||||||||||||| |||| |||| |||||| | ||||||||| ||||||   |||||| |||||| |||||||||||||| | || ||    
T  44508214 aataattatttataaaagttgagctctataaagttttaagaagtcaaatttatctataattgacactaaattaaatagattatcaatattttattaacat 44508313  T
Q  129 catctctttttaaaccaacaaaattgtttggagtagc 165  Q
    |||| || |||||||||| ||||||||||| ||||||    
T  44508314 catccctctttaaaccaataaaattgtttgaagtagc 44508350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 93 - 203
Target Start/End: Complemental strand, 7093624 - 7093514
Alignment:
Q  93 actaaactaaatatattatcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagtag-ccaataatatatcaatagggtagctat 191  Q
    ||||||||||||| ||||||| ||||| || | |||||||||| ||| ||||||||||||||||||||||||  ||||||||||| ||| ||||| |||     
T  7093624 actaaactaaatagattatcattatttcttga-tatcatctctgtttgaaccaacaaaattgtttggagtagttcaataatatattaatggggtatctac 7093526  T
Q  192 atataaatctat 203  Q
     |||||| ||||    
T  7093525 gtataaaactat 7093514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 31067077 - 31067248
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataatt--aactaaactaaatatattatcaatattttttcaa 125  Q
    |||||||||||||| ||||||||||||| ||  ||||| | |||| | |||  |||||||||||   |||||| |||||  ||||||||| |||||  ||    
T  31067077 aacaataattatttttaaaagttgagctctaaggagtttttagaagtcaaa--tatccataattgacactaaattaaattgattatcaatgtttttataa 31067174  T
Q  126 tatcatctctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaata--gggtagctatatata 196  Q
    ||| |||||| ||| |||||| |||||||||| |||| ||| |||||||| | ||||  |||||||||||||||    
T  31067175 tattatctctgttttaaccaataaaattgtttagagtggccaaataatatcttaatatggggtagctatatata 31067248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 28 - 245
Target Start/End: Complemental strand, 55250612 - 55250388
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatatattatcaatattttttcaa 125  Q
    |||||||||||||||| ||||||||||| |||| | || |||||| | ||||||||| |||||| ||  ||||||||||| |||||||||||||| | ||    
T  55250612 aacaataattatttattaaagttgagctatataaaattttaagaagtcaaatttatctataattgacactaaactaaatagattatcaatattttattaa 55250513  T
Q  126 tatcatctctttttaaaccaacaaaattgtttggagtag-ccaataatatatcaatagggtagctata--tataaatctataccaattttt-aag-tttt 220  Q
     || ||| || ||| |||||||||||||||||| ||||| | |||||||||| ||| |||||||||||  || ||| |||||| | ||||| ||| ||||    
T  55250512 cattatccctctttgaaccaacaaaattgtttgaagtagtcaaataatatattaatggggtagctatacgtacaaaactatactattttttcaagttttt 55250413  T
Q  221 tcttatgcttttcgggtagccaatg 245  Q
    |||| | ||||||||||||||||||    
T  55250412 tctttttcttttcgggtagccaatg 55250388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 29857378 - 29857534
Alignment:
Q  12 aagaatataaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatatatt 109  Q
    ||||| ||||||||||| ||||| ||| ||||||||||||||||||| |||||| | |||| | || ||||||||||||||||  ||||||||||| |||    
T  29857378 aagaaaataaaagttaa-caatagttacttataaaagttgagctttaaagagtttttagaagtcaattttatccataattaacactaaactaaatagatt 29857476  T
Q  110 atcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagtagcca 167  Q
    ||||||||||||  |  ||||||||| ||| ||||||||||||| |||||||| ||||    
T  29857477 atcaatatttttatagaatcatctctgttttaaccaacaaaattatttggagtggcca 29857534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 221
Target Start/End: Original strand, 47668905 - 47669095
Alignment:
Q  35 attatttataaaagttgagctttatagagttgtaagaattaaaatttatccataatt--aactaaactaaatatattatcaatattttttcaatatcatc 132  Q
    |||||||||||||||||| || |||| |||| |||||| | ||||||||| ||||||   |||||| |||||| |||||||||||||| | || || |||    
T  47668905 attatttataaaagttgaactctataaagttttaagaaatcaaatttatctataattgacactaaattaaatagattatcaatattttattaacattatc 47669004  T
Q  133 tctttttaaaccaacaaaattgtttggagtag-ccaataatatatcaatagggtagctatatataaatctataccaattttt-aagttttt 221  Q
      | |||||||||||||||||||| ||||||| | |||||||||| ||| ||||||| ||||| ||| |||||| | ||||| ||||||||    
T  47669005 catctttaaaccaacaaaattgttcggagtagtcaaataatatattaatggggtagccatatacaaaactatactattttttcaagttttt 47669095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 1101079 - 1101249
Alignment:
Q  30 caataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatatattatcaatattttttcaata 127  Q
    ||||| |||||| |||||| |||||| ||| ||||| ||||||   ||||||||| ||| || ||  ||||||||||| ||||||||| ||| || ||||    
T  1101079 caatagttatttgtaaaagatgagctctattgagttttaagaagacaaatttatctatagttgacactaaactaaatagattatcaatttttgtt-aata 1101177  T
Q  128 tcatctctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaatagggtagctatatataaa 198  Q
    | || ||| ||| ||||||| |||||||||||||||||| |||||||||| ||| ||| |||||||||||||    
T  1101178 taatatctctttgaaccaactaaattgtttggagtagccaaataatatattaatgggggagctatatataaa 1101249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 46964120 - 46964029
Alignment:
Q  31 aataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaactaaactaaatatattatcaatatttttt 122  Q
    ||||||| |||||||||||||||||  || ||||| |||||| | |||||||||||||||| |||  |||||||| ||||||||||||||||    
T  46964120 aataattttttataaaagttgagctcgatggagttttaagaagtcaaatttatccataattgactctactaaataaattatcaatatttttt 46964029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 1838690 - 1838565
Alignment:
Q  67 taagaattaaaatttatccataattaac--taaactaaatatattatcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagtag 164  Q
    |||||| ||||||||||||||| |||||  |||| |||||||||||||||||||| |  | ||||||||||  || | ||||||||||||||||||||||    
T  1838690 taagaagtaaaatttatccatagttaacattaaagtaaatatattatcaatatttatgtattatcatctctcattgatccaacaaaattgtttggagtag 1838591  T
Q  165 -ccaataatatatcaatagggtagct 189  Q
     | |||||||||| ||| | ||||||    
T  1838590 tcaaataatatattaatggagtagct 1838565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 20447758 - 20447895
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataatt--aactaaactaaatatattatcaatattttttcaa 125  Q
    |||||||||||||||||||||||||||| |||   |||||||||| | |||||||||  |||||   |||||  |||||| || ||| ||||||| | ||    
T  20447758 aacaataattatttataaaagttgagctctatgatgttgtaagaagtcaaatttatctttaattgacactaacttaaatagatcatc-atattttattaa 20447856  T
Q  126 tatcatctctttttaaaccaacaaaattgtttggagtag 164  Q
     |||||| || ||| || |||||||||||||| ||||||    
T  20447857 catcatccctctttcaatcaacaaaattgtttagagtag 20447895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 34028080 - 34028167
Alignment:
Q  116 attttttcaatatcatctctttttaaaccaacaaaattgtttggagtagccaataatatatcaatagggtagctatatataaatctat 203  Q
    ||||||| |||| ||||||| ||| |||| ||||||||||||| ||||| |||  |||||| |||||||||| || ||||||| ||||    
T  34028080 atttttttaataccatctctctttgaacccacaaaattgtttgaagtagtcaaatatatattaatagggtagttacatataaaactat 34028167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 20991335 - 20991436
Alignment:
Q  67 taagaattaaaatttatccataattaactaaactaaatatattatcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagtagcc 166  Q
    |||||| | ||||||||||||| || |||  |||||||| |||||||||||||||| | ||| |  ||| ||  ||| |||||||||| |||||||||||    
T  20991335 taagaagtcaaatttatccatagttgactctactaaatagattatcaatattttttaattattacatctcttcgaacaaacaaaattgcttggagtagcc 20991434  T
Q  167 aa 168  Q
    ||    
T  20991435 aa 20991436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 28 - 192
Target Start/End: Original strand, 18061118 - 18061285
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatatattatcaatattttttcaa 125  Q
    ||||||| |||||||||||| ||||||| ||||||||| |||||| | |||||||| ||||||  ||  ||||||||||| ||||| |||||| ||| ||    
T  18061118 aacaatagttatttataaaatttgagctatatagagttttaagaagtcaaatttattcataatggacactaaactaaatagattattaatattattttaa 18061217  T
Q  126 tatcatctctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaatagggtagctata 192  Q
    || ||||||| ||| ||||||| ||||||||||||||| || |||||||||| ||| |||||||||||    
T  18061218 tagcatctctctttgaaccaaccaaattgtttggagtaaccaaataatatattaatggggtagctata 18061285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 43559811 - 43559627
Alignment:
Q  10 cgaagaatataaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatata 107  Q
    ||||||| |||||| |||| ||||||||||||||||||||||  ||||||  |||| ||| || | ||||||||  |||||| ||  |||||||| || |    
T  43559811 cgaagaaaataaaatttaa-caataattatttataaaagttgtactttatgaagttttaacaagtcaaatttatttataattgacactaaactaagtaga 43559713  T
Q  108 ttatcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaatagggtagctatat 193  Q
    |||| | |||||||| || || |||||| |||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||    
T  43559712 ttataagtatttttttaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaat-gggtagctatat 43559627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 19866037 - 19865859
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaa--ctaaactaaatatattatcaatattttttcaa 125  Q
    |||||||||||||||||||||||| ||| |||  |||| ||||   | ||||||||| |||||| |  |||||||||||| |||||| ||||||| |  |    
T  19866037 aacaataattatttataaaagttgtgctctatgaagttttaag---tcaaatttatctataattgatactaaactaaatagattatctatattttattga 19865941  T
Q  126 tatcatctctttttaaaccaac-aaaattgtttggagtagcc-aataatatatcaatagggtagctatatataaatctatac 205  Q
    |||||||  | ||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| ||| ||| ||||||    
T  19865940 tatcatccttctttaaaccaacaaaaattgtttggagtagccaaataatatatcaatggggtagctacatacaaaactatac 19865859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 19870938 - 19870760
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaa--ctaaactaaatatattatcaatattttttcaa 125  Q
    |||||||||||||||||||||||| ||| |||  |||| ||||   | ||||||||| |||||| |  |||||||||||| |||||| ||||||| |  |    
T  19870938 aacaataattatttataaaagttgtgctctatgaagttttaag---tcaaatttatctataattgatactaaactaaatagattatctatattttattga 19870842  T
Q  126 tatcatctctttttaaaccaac-aaaattgtttggagtagcc-aataatatatcaatagggtagctatatataaatctatac 205  Q
    |||||||  | ||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| ||| ||| ||||||    
T  19870841 tatcatccttctttaaaccaacaaaaattgtttggagtagccaaataatatatcaatggggtagctacatacaaaactatac 19870760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 28 - 205
Target Start/End: Complemental strand, 19875839 - 19875661
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaa--ctaaactaaatatattatcaatattttttcaa 125  Q
    |||||||||||||||||||||||| ||| |||  |||| ||||   | ||||||||| |||||| |  |||||||||||| |||||| ||||||| |  |    
T  19875839 aacaataattatttataaaagttgtgctctatgaagttttaag---tcaaatttatctataattgatactaaactaaatagattatctatattttattga 19875743  T
Q  126 tatcatctctttttaaaccaac-aaaattgtttggagtagcc-aataatatatcaatagggtagctatatataaatctatac 205  Q
    |||||||  | ||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| ||| ||| ||||||    
T  19875742 tatcatccttctttaaaccaacaaaaattgtttggagtagccaaataatatatcaatggggtagctacatacaaaactatac 19875661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 29686129 - 29686294
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatatattatcaatattttttcaa 125  Q
    ||||||| ||| ||||||||||||| ||||| |||||| | |||| | || ||||||||||||| ||  |||| |||||| |||||||||||||||  |     
T  29686129 aacaatagttacttataaaagttgacctttaaagagtttttagaagtcaattttatccataattgacactaaaataaatagattatcaatatttttatag 29686228  T
Q  126 tatcatctctttttaaaccaacaaaattgtttggagt-agccaataatatatcaatagggtagcta 190  Q
    |||||||||| ||| ||||||||||||| |||| ||| | | |||||||| | ||| |||||||||    
T  29686229 tatcatctctgttttaaccaacaaaattatttgaagtgaccaaataatatcttaatggggtagcta 29686294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 245
Target Start/End: Complemental strand, 5608577 - 5608435
Alignment:
Q  104 tatattatcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaatagggtagctatatataaatcta 202  Q
    |||||||||||||||| | ||| ||||||||  |||||||||||||||||| || | ||| || |||||||||| ||| || |||||||| ||||   ||    
T  5608577 tatattatcaatatttatgcaacatcatctccctttaaaccaacaaaattgattagggtaaccaaataatatattaatgggttagctatacataatctta 5608478  T
Q  203 taccaatt-tttaagtttttcttatgcttttcgggtagccaatg 245  Q
    |||||||| || |||||||| || | ||||| ||||||||||||    
T  5608477 taccaattattcaagttttt-ttcttcttttggggtagccaatg 5608435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 45040068 - 45040240
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaa--ctaaactaaatatattatcaatattttttcaa 125  Q
    ||||||| |||||| |||||  |||||| ||| ||||| ||||||   ||||||||| |||||| |  |||||||||||| ||||||||| |||| | ||    
T  45040068 aacaatagttatttgtaaaatatgagctctatggagttttaagaagacaaatttatctataattgatactaaactaaatagattatcaat-ttttgttaa 45040166  T
Q  126 tatcatctctttttaaaccaacaaaattgtttggagt-agccaataatatatcaatagggtagctatatataaa 198  Q
    ||| || ||| ||| || ||||||||||||||||||| |   |||||||||| ||| |||||| | ||||||||    
T  45040167 tataatatctctttgaaacaacaaaattgtttggagtgactaaataatatattaatggggtagttgtatataaa 45040240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 33226775 - 33226840
Alignment:
Q  130 atctctttttaaaccaacaaaattgtttggagtagcc-aataat-atatcaatagggtagctatat 193  Q
    |||||| |||||||| | ||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  33226775 atctctctttaaaccgataaaattgtttggagtagccaaataataatattaatagggtagctatat 33226840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 5609026 - 5608979
Alignment:
Q  36 ttatttataaaagttgagctttatagagttgtaagaattaaaatttat 83  Q
    ||||||||||||||||||||||||  ||||||||||| | ||||||||    
T  5609026 ttatttataaaagttgagctttatgaagttgtaagaacttaaatttat 5608979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 21017212 - 21017273
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataa 89  Q
    ||||||| |||||||||||||||||| | ||| ||||| |||||| | |||||||| |||||    
T  21017212 aacaatagttatttataaaagttgagatatatggagttttaagaagtcaaatttatgcataa 21017273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 19910264 - 19910102
Alignment:
Q  28 aacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaactaaactaaatatattatcaatattttttcaata 127  Q
    ||||||| |||||||||||||||| ||| ||  | ||| | |||| | ||||||||||||||  | |||||| ||||| |||||||||||||||  ||||    
T  19910264 aacaatagttatttataaaagttgtgctctaaggtgtttttagaagtcaaatttatccataaaca-ctaaacaaaatagattatcaatatttttataata 19910166  T
Q  128 tcatctctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaatagggtagcta 190  Q
    |||||||| ||| |||||||||||||||||||||||||| |||||||| | ||| |||||||||    
T  19910165 tcatctctgttttaaccaacaaaattgtttggagtagccaaataatattttaatggggtagcta 19910102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 6036944 - 6036753
Alignment:
Q  10 cgaagaatataaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataat--taactaaactaaatata 107  Q
    ||||||| ||||||| |||| | || ||||||||||||||||| || ||| ||||| |||||| |||||||||||||||||  | | |||| |  |||||    
T  6036944 cgaagaaaataaaagctaaatagtagttatttataaaagttgaactctattgagttttaagaagtaaaatttatccataattgtcattaaatttgatata 6036845  T
Q  108 ttatcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaatagggtagctatatataaa 198  Q
    || | ||||||| |  |||||||||||  ||| |||||||||||||||||||||||||| |||||||  | ||| ||||||||| |||||||    
T  6036844 tttttaatatttgtgtaatatcatctccctttgaaccaacaaaattgtttggagtagccgaataataatttaatggggtagctacatataaa 6036753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 47236032 - 47235870
Alignment:
Q  36 ttatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatatattatcaatattttttcaatatcatct 133  Q
    |||||| |||||| |||| | ||| ||||| ||||||   ||||||||| |||||| ||  ||||||||||| ||||||||| ||| || ||||| || |    
T  47236032 ttatttgtaaaagatgagttctatggagttttaagaagacaaatttatctataattgacactaaactaaatagattatcaatttttgtt-aatataatat 47235934  T
Q  134 ctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaatagggtagctatatata 196  Q
    || |||||| ||||||||||||||||| ||||| |||||||||| ||| | |||||||||||||    
T  47235933 ctctttaaatcaacaaaattgtttggaatagccaaataatatattaatggagtagctatatata 47235870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 210
Target Start/End: Original strand, 34821148 - 34821262
Alignment:
Q  97 aactaaatatattatcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagtagccaa-taatatatcaatagggtagctatatat 195  Q
    ||||||||| |||||||||||| |   || ||| || || |||||||||||||||||||||||||||  ||| |||||||||||| ||||||||| |||     
T  34821148 aactaaatagattatcaatattatactaacatcgtccctctttaaaccaacaaaattgtttggagtaatcaagtaatatatcaatggggtagctacatac 34821247  T
Q  196 aaatctataccaatt 210  Q
    ||| |||||| ||||    
T  34821248 aaaactatactaatt 34821262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 28086240 - 28086311
Alignment:
Q  20 aaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataatt 91  Q
    ||||| ||||||||| |||||||||||||||||||||||   ||||||||||| | |||||||| |||||||    
T  28086240 aaaagataaacaatagttatttataaaagttgagctttacgaagttgtaagaacttaaatttattcataatt 28086311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 163
Target Start/End: Original strand, 27705385 - 27705473
Alignment:
Q  76 aaatttatccataattaa--ctaaactaaatatattatcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagta 163  Q
    |||||||||||||||| |  | || ||||||| |||||||||||||||| ||||| || | |||||||||||||||||||||||| ||||    
T  27705385 aaatttatccataattgataccaagctaaatagattatcaatatttttttaatattattt-tttttaaaccaacaaaattgtttgaagta 27705473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 13325488 - 13325677
Alignment:
Q  10 cgaagaatataaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataatt--aactaaactaaatata 107  Q
    ||||||| |||||||||||| |||| |||||||||||| || | |||||| ||||| |||||| | ||||||||| ||||||   |||||||||||||||    
T  13325488 cgaagaaaataaaagttaaataatagttatttataaaaatttaactttatggagttataagaacttaaatttatctataatttacactaaactaaatata 13325587  T
Q  108 ttatcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaatagggtagctatatataaa 198  Q
    |||| | ||||| | | ||||||||||| ||||||||| ||||||||||   |||| || |||||||||| ||| ||||||||| |||||||    
T  13325588 ttattattatttgtgc-atatcatctctctttaaaccatcaaaattgttaaaagtaaccaaataatatattaat-gggtagctacatataaa 13325677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 198
Target Start/End: Complemental strand, 4017207 - 4017040
Alignment:
Q  34 aattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataatta--actaaactaaatatattatcaatattttttcaatatcat 131  Q
    |||||||||||||||||||| | ||| ||||| | |||| | |||||||| ||||||||  ||||||||||||| ||||  ||| | |||| ||||||||    
T  4017207 aattatttataaaagttgagttctatcgagttttcagaagtcaaatttattcataattaacactaaactaaatagattacaaatgtatttttaatatcat 4017108  T
Q  132 ctctttttaaaccaacaaaattgtttggagtag-ccaataatatatcaatagggtagctatatataaa 198  Q
    ||||  || ||| |||||||||||||| ||| |   |||||||| | ||| ||||||||| |||||||    
T  4017107 ctctccttgaactaacaaaattgtttgaagttgttaaataatatttgaatggggtagctacatataaa 4017040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 20921381 - 20921333
Alignment:
Q  129 catctctttttaaaccaacaaaattgtttggagtagccaa-taatatat 176  Q
    ||||||| |||||||||||||||||||||  ||||||||| ||||||||    
T  20921381 catctctatttaaaccaacaaaattgtttaaagtagccaagtaatatat 20921333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 16452 - 16586
Alignment:
Q  31 aataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaa--ctaaactaaatatattatcaatattttttc-aata 127  Q
    |||| |||| ||||||||||||| | ||| || || |||||| | | ||||||||| |||| |  |||||||||||| ||||||||||||||||  ||||    
T  16452 aatagttatctataaaagttgagatgtat-gaattttaagaagtcagatttatccacaattgatactaaactaaataaattatcaatattttttttaata 16550  T
Q  128 tcatctctttttaaaccaacaaaattgtttggagta 163  Q
    ||||| || |||||||||||||||||||||||||||    
T  16551 tcatccctctttaaaccaacaaaattgtttggagta 16586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 195
Target Start/End: Original strand, 18081 - 18242
Alignment:
Q  36 ttatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatatattatcaatattttttcaatatcatct 133  Q
    ||||||||| ||||| |||||||  || || |||||| ||||||| ||| |||||| ||  ||||||||||||||||| ||||||| |  ||||||||||    
T  18081 ttatttatagaagttaagctttacggattt-taagaagtaaaattcatctataattgacaataaactaaatatattattaatatttgtgtaatatcatct 18179  T
Q  134 ctttttaaaccaacaaaattgtttggagtag-ccaataatatatcaatagggtagctatatat 195  Q
       ||||||||||||||||| |||||||||| | |||||||||| |||  |||||||| ||||    
T  18180 tcctttaaaccaacaaaattatttggagtagacaaataatatattaatgaggtagctacatat 18242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 270420 - 270235
Alignment:
Q  12 aagaatataaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaattaaaatttatccataatt--aactaaactaaatatatt 109  Q
    ||||| ||||||| |||| |||| |||||||||||||||||||| ||  ||||| | | || | ||||||||  ||||||   |||||||||| || |||    
T  270420 aagaaaataaaagctaaa-aatagttatttataaaagttgagctctaaggagtttttaaaagtcaaatttatttataattgacactaaactaagtagatt 270322  T
Q  110 atcaatattttttcaatatcatctctttttaaaccaacaaaattgtttggagtagcc-aataatatatcaatagggtagctatatata 196  Q
    ||||||||||||  |||||||||||| ||| ||||||  |||||||||| ||||||| |||||||| | ||| |||||| || |||||    
T  270321 atcaatatttttataatatcatctctgttttaaccaa-taaattgtttgaagtagccaaataatatcttaatggggtagttacatata 270235  T

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Target: scaffold0406 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 36 - 195
Target Start/End: Original strand, 12650 - 12811
Alignment:
Q  36 ttatttataaaagttgagctttatagagttgtaagaattaaaatttatccataattaac--taaactaaatatattatcaatattttttcaatatcatct 133  Q
    |||||| |||||  |||||| ||| ||||| ||||||   ||||||||||||| || ||  ||||||||||| | ||||||| ||| || ||||| || |    
T  12650 ttatttgtaaaaaatgagctctatggagttttaagaagacaaatttatccatacttgacactaaactaaatagaatatcaatttttatt-aatataatat 12748  T
Q  134 ctttttaaaccaacaaaattgtttggagtagc-caataatatatcaatagggtagctatatat 195  Q
    || ||| |||||||||||||||||||||||||  ||||||||||  || ||||||||||||||    
T  12749 ctctttgaaccaacaaaattgtttggagtagcaaaataatatattcatggggtagctatatat 12811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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