View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_low_7 (Length: 461)
Name: NF17838_low_7
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 450
Target Start/End: Complemental strand, 2057830 - 2057388
Alignment:
| Q |
7 |
ggtttctagattaataataatcatcggcagagtcaattgatacttcttaccaataatttggttaaaatttaaacatttcagattatgccaatatctggaa |
106 |
Q |
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| T |
2057830 |
ggtttctagattaataataatcatcggcagagtcaattgatacttcttaccaataatttggttaaaatttaagcatttcagattatgccaatatcaggaa |
2057731 |
T |
|
| Q |
107 |
ccaaaaggatccattttttagaagatttaaaagaaacaagaacaactaaaaagaagaataaatcgtttatttattatagtttttgcaatctaatttttaa |
206 |
Q |
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| T |
2057730 |
ccaaaaggatcaattttttagaagatttaaaagaaacaagaacaactaaaaagaagaataaatcgtttatttattatagtttttgcaatctaatttt-aa |
2057632 |
T |
|
| Q |
207 |
ctgttacaacaggggaagttgatgaactgcggtggagggggtagctgtggaacttgcatagtggaggtgtgaattttcttcttctcatatcatactaaca |
306 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2057631 |
ctgtaacaacaggggaaattgatgaactgcggtggagggggtagctgtggaacttgcatagtggaggtgtgaattttcttcttctcatatcatactaaca |
2057532 |
T |
|
| Q |
307 |
tggtccatttttattgttattattagggtttaataataatcagtatgaatatgttctcttggtcagttagcataacatatccaagacatgaataatttta |
406 |
Q |
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|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2057531 |
tgatccatttttatttttattattagggtttaataataatcagtatgaatatgttctcttggtcagttagcataacatatccaagacatgaattatttta |
2057432 |
T |
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| Q |
407 |
gatagtttttcgctttactacaaattagtactttttacatctct |
450 |
Q |
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| T |
2057431 |
gatagtttttcgctttactacaaattagtacttattacatctct |
2057388 |
T |
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