View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17838_low_9 (Length: 449)
Name: NF17838_low_9
Description: NF17838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17838_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 9e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 33331865 - 33331686
Alignment:
| Q |
13 |
aatatggcaggctatttgttcacagcaaatttttcacacttagttgtaatttcaaatttttcnnnnnnnnnntctattttggtatccactatccactttc |
112 |
Q |
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| T |
33331865 |
aatatggcaggctatttgttcacagcaaatttttcacacttagtagtaatttcaaatttttcaaaaaaaaattctattttggtatccactatccactttc |
33331766 |
T |
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| Q |
113 |
caatacatttgcttgagctaaaaaagggcatgttaaaagcttgaattgataccatttagaggtatcattcaacaacaaga |
192 |
Q |
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| T |
33331765 |
caatacatttgcttgagctaaaaaagggcatgttaaaagcttgaattgataccatttagaggtatcattcaacaacaaga |
33331686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 231 - 434
Target Start/End: Complemental strand, 33331647 - 33331443
Alignment:
| Q |
231 |
caaagtagaaagcaaaagaaaattcctttaaacaccaactcatcaatacttatgagatacaannnnnnnnnnnnnnnnnnnnn-actcatcactgcttaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33331647 |
caaagtagaaagcaaaagaaaattcctttaaacaccaactcatcaatacttatgagatacaattttttctttttatctttttttactcatcactgcttaa |
33331548 |
T |
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| Q |
330 |
gtcactatgacatcatcaactctataaacaaaaaactacatccaagttttctagatacaaaaatactgcataaataaaaataatactatgtatgatgtat |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33331547 |
gtcactatgacatcatcaactctataaacaaaaaactacatccaagttttctagatacaaaaatactgcataaataaaagtaatactatgtatgatgtat |
33331448 |
T |
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| Q |
430 |
ccact |
434 |
Q |
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||||| |
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| T |
33331447 |
ccact |
33331443 |
T |
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