View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17839_high_6 (Length: 235)
Name: NF17839_high_6
Description: NF17839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17839_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 337706 - 337924
Alignment:
| Q |
1 |
accttttgagagaaagcaagcaattgaagccgatatacttccaagtggtcatcatgttttcccgaataagatggtannnnnnnctttgtattcaatggga |
100 |
Q |
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| T |
337706 |
accttttgagagaaagcaagcaattgaagccgatatacttccaagtggtcatcatgttttcccgaataagatggtatttttttctttgtattcaatggga |
337805 |
T |
|
| Q |
101 |
agggatgcaaatatttggggagaagattgcttggagttcaagccagagaggtggatttctgagagaggaggcattgttttatgcaccatcttacaaattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
337806 |
agggatgcaaatatttggggagaagattgcttggagttcaagccagagaggtggatttctgagagaggaggcattg-tttatgcaccatcttacaaattc |
337904 |
T |
|
| Q |
201 |
tttagttttaatgctggacc |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
337905 |
tttagttttaatgctggacc |
337924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 341744 - 341963
Alignment:
| Q |
1 |
accttttgagagaaagcaagcaattgaagccgatatacttccaagtggtcatcatgttttcccgaataagatggtannnnnnnctttgtattcaatggga |
100 |
Q |
| |
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|||||||||||||||| |||| || || |||||||||||||||||||||||||||||| |||||||| ||| || |||||||| |||||||| |
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| T |
341744 |
accttttgagagaaaggaagcggttaaacccgatatacttccaagtggtcatcatgtttatccgaataatatgatattgttttctttgtatgcaatggga |
341843 |
T |
|
| Q |
101 |
agggatgcaaatatttggggagaagattgcttggagttcaagccagagaggtggatttctgagagaggaggcattgttttatgcaccatcttacaaattc |
200 |
Q |
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||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||| |
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| T |
341844 |
agggatgaaaatatttggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattg-tttatgcgccgtcttacaagttc |
341942 |
T |
|
| Q |
201 |
tttagttttaatgctggacct |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
341943 |
tttagttttaatgctggacct |
341963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 377575 - 377678
Alignment:
| Q |
116 |
tggggagaagattgcttggagttcaagccagagaggtggatttctgagagaggaggcattgttttatgcaccatcttacaaattctttagttttaatgct |
215 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| || ||| ||| ||||| || |||||||||||||||||| |
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| T |
377575 |
tggggagaagattgcttggagttcaagccagagagatggatatctgagagaggtagcattg-ttcatgaaccgtcttataagttctttagttttaatgct |
377673 |
T |
|
| Q |
216 |
ggacc |
220 |
Q |
| |
|
||||| |
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|
| T |
377674 |
ggacc |
377678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 346927 - 346823
Alignment:
| Q |
116 |
tggggagaagattgcttggagttcaagccagagaggtggatttctgagagaggaggcattgttttatgcaccatcttacaaattctttagttttaatgct |
215 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| || || ||||||||||||| || |||||| ||||||| |
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| T |
346927 |
tggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattg-ttcatacaccatcttacaagtttattagttataatgct |
346829 |
T |
|
| Q |
216 |
ggacct |
221 |
Q |
| |
|
|||||| |
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|
| T |
346828 |
ggacct |
346823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 355586 - 355482
Alignment:
| Q |
116 |
tggggagaagattgcttggagttcaagccagagaggtggatttctgagagaggaggcattgttttatgcaccatcttacaaattctttagttttaatgct |
215 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| || || ||||||||||||| || |||||| ||||||| |
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| T |
355586 |
tggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattg-ttcatacaccatcttacaagtttattagttataatgct |
355488 |
T |
|
| Q |
216 |
ggacct |
221 |
Q |
| |
|
|||||| |
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|
| T |
355487 |
ggacct |
355482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 347038 - 346991
Alignment:
| Q |
5 |
tttgagagaaagcaagcaattgaagccgatatacttccaagtggtcat |
52 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||| ||| |
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|
| T |
347038 |
tttgagagaaagcaagcaattaaaggtgatatacttccaagtggccat |
346991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 355697 - 355650
Alignment:
| Q |
5 |
tttgagagaaagcaagcaattgaagccgatatacttccaagtggtcat |
52 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||| ||| |
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|
| T |
355697 |
tttgagagaaagcaagcaattaaaggtgatatacttccaagtggccat |
355650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 3321649 - 3321706
Alignment:
| Q |
113 |
atttggggagaagattgcttggagttcaagccagagaggtggatttctgagagaggag |
170 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||| ||| ||||| |
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|
| T |
3321649 |
atttggggagaagattgcttggagtttaaaccagagaggtggatttctaagaaaggag |
3321706 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 12164360 - 12164257
Alignment:
| Q |
116 |
tggggagaagattgcttggagttcaagccagagaggtggatttctgagagaggaggcattgttttatgcaccatcttacaaattctttagttttaatgct |
215 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||| | | |||||| || | |||||| || |||||||| ||| || |||||||||| |
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| T |
12164360 |
tggggagaagattgcttggaatttaagccagagaggtggatttctcaaaaaggagggatag-tttatgttccttcttacaagttcattgcttttaatgct |
12164262 |
T |
|
| Q |
216 |
ggacc |
220 |
Q |
| |
|
||||| |
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|
| T |
12164261 |
ggacc |
12164257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 36668212 - 36668157
Alignment:
| Q |
116 |
tggggagaagattgcttggagttcaagccagagaggtggatttctgagagaggagg |
171 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||| ||||| ||| |||||| |
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|
| T |
36668212 |
tggggagaagattgcttggaatttaaaccagagaggtgggtttctaagaaaggagg |
36668157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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