View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17839_low_2 (Length: 422)

Name: NF17839_low_2
Description: NF17839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17839_low_2
NF17839_low_2
[»] chr1 (2 HSPs)
chr1 (5-255)||(46537763-46538013)
chr1 (317-404)||(46537612-46537699)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 46538013 - 46537763
Alignment:
Q  5 tgttttttctcgataatcacacccaaatatcttacattcccaatgaagaagccttaaaaaggttaaaccaaaaatcaatatttagtactcacaacaagta 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46538013 tgttttttctcgataatcacacccaaatatcttacattcccaatgaagaagccttaaaaaggttaaaccaaaaatcaatatttagtactcacaacaagta 46537914  T
Q  105 gcaagcaccaccaagtccaacaattcaaacctcagagcaacatcattaatacatgcatcatatatatgcaataataatacaaaaaagcccaaaaggggaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46537913 gcaagcaccaccaagtccaacaattcaaacctcagagcaacatcattaatacatgcatcatatatatgcaataataatacaaaaaagcccaaaaggggaa 46537814  T
Q  205 aaatttaagatggctgctctgcaacattttccctgttcggttctgccaacg 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46537813 aaatttaagatggctgctctgcaacattttccctgttcggttctgccaacg 46537763  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 317 - 404
Target Start/End: Complemental strand, 46537699 - 46537612
Alignment:
Q  317 catcaaggcaaaaaatacttattcccacacttgcaacgccatgcttctggataatactcaaggcgtatgattaaaccggggtgaaccg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46537699 catcaaggcaaaaaatacttattcccacacttgcaacgccatgcttctggataatactcaaggcgtatgattaaaccggggtgaaccg 46537612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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