View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17839_low_3 (Length: 400)
Name: NF17839_low_3
Description: NF17839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17839_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 52475002 - 52474619
Alignment:
| Q |
1 |
gacatgttaagagtggaaagaccaagaaggataatttttctcagcaacataccaaagagaagctaatgattcataaatgttcttttgttcacgtttcctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52475002 |
gacatgttaagagtggaaagaccaagaaggataatttttctcagcaacataccaaagagaagctaatgattcataaatgttcttttgttcacgtttcctg |
52474903 |
T |
|
| Q |
101 |
ttgctccataaaggaatttctcacactccttagctccaaatcttataaactctttgacaagcgcttgcaaacgttcagccaataaactattataacactc |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52474902 |
ttgcaccataaaggaatttctcacactccttagctccaaatcttataaactctttgacaagcgcttgcaaacgttcagccaataaactattataacactc |
52474803 |
T |
|
| Q |
201 |
tgatgttttggtctggtgcttgaaccaacatagatccgattcctgtaaaatttggcgcagccacattgatatgtcttgctaaagaattgttaaactgcct |
300 |
Q |
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| T |
52474802 |
tgatgttttggtccggtgcttgaaccaacatagatccgattcctgtaaaatttggcgcagccacattgatatgtcttgctaaagaattgttaaactgcct |
52474703 |
T |
|
| Q |
301 |
cgagctgcttttgtcaccatcgtcaagatcttgaaccccacctttgaccaaacatcccacttgagcaccttcaatgtatgcatt |
384 |
Q |
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| T |
52474702 |
cgagctgcttttgtcaccatcgtcaagatcttgaaccccacctttgaccaaacatcccacttgagcaccttcaatgtatgcatt |
52474619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 201
Target Start/End: Complemental strand, 1006786 - 1006661
Alignment:
| Q |
77 |
atgttcttttgttcacgtttcctgttgctcc-ataaaggaatttctcacactccttagctccaaatcttataaactctttgacaagcgcttgcaaacgtt |
175 |
Q |
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||||||||||||| |||||| |||||| || |||||||||||||||||| |||| |||||| |||| |||||||||| ||||| |||| || ||||| |
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| T |
1006786 |
atgttcttttgtttgcgtttcatgttgcccccataaaggaatttctcacagtcctcgactccaattcttgtaaactcttttacaagtgctttcatacgtt |
1006687 |
T |
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| Q |
176 |
cagccaataaactattataacactct |
201 |
Q |
| |
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|||||||| || |||||||| ||||| |
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| T |
1006686 |
cagccaatgaagtattataatactct |
1006661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 1451673 - 1451611
Alignment:
| Q |
133 |
gctccaaatcttataaactctttgacaagcgcttgcaaacgttcagccaataaactattataa |
195 |
Q |
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| T |
1451673 |
gctccaattcttataaactctttgacaatcgctttcatacgttcagccaatgaactattataa |
1451611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 38791945 - 38792012
Alignment:
| Q |
99 |
tgttgctccataaaggaatttctcacactccttagctccaaatcttataaactctttgacaagcgctt |
166 |
Q |
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| T |
38791945 |
tgttgcttcatggaggaatttctcacagttcttagctccaattcttataaactctttgacaagtgctt |
38792012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 381
Target Start/End: Original strand, 21221250 - 21221329
Alignment:
| Q |
302 |
gagctgcttttgtcaccatcgtcaagatcttgaaccccacctttgaccaaacatcccacttgagcaccttcaatgtatgc |
381 |
Q |
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|||| ||| |||||||| | |||| ||| ||||||||||||||||||||||| || || |||||||| || |||||||| |
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| T |
21221250 |
gagcagctcttgtcaccctgatcaacatcctgaaccccacctttgaccaaacaaccaacctgagcaccatccatgtatgc |
21221329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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