View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17839_low_4 (Length: 300)
Name: NF17839_low_4
Description: NF17839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17839_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 285
Target Start/End: Original strand, 38192021 - 38192300
Alignment:
| Q |
6 |
aggagcacagacaatagtgcaaacacagtcaccaacaccatggaggcagtagagactttgaagtttgcattgctaagtttccttctacatcgtttatcat |
105 |
Q |
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| T |
38192021 |
aggatcactgacaatagtgcaaacacagtcaccaacaccatggaggcagtagagactttgaagtttgcattgctaagtttccttctacatcgtttatcat |
38192120 |
T |
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| Q |
106 |
ctattactggttgtatacaatcccttctgtagccttccttgtagtcgcgccttgaccaactccatgtccaatggaagcaagccggacaaccaaccaacta |
205 |
Q |
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| T |
38192121 |
ctattactggttgtatacaatcccttctgtagccttccttgtagtcgcgccttgaccaactccatgtccaatggaagcaagccggacaaccaacaaacta |
38192220 |
T |
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| Q |
206 |
acaataacagcaaaaatcaatggactcataagtttcacctattcc-aataaagtaaagaaaatgattacttaagatataat |
285 |
Q |
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| T |
38192221 |
acaataacagcaaaaatcaacggagtcataa-tttcacctattccaaataaagtaaagaaaatgattacttaagatataat |
38192300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 6 - 267
Target Start/End: Complemental strand, 38646576 - 38646316
Alignment:
| Q |
6 |
aggagcacagacaatagtgcaaacacagtcaccaaca-ccatggaggcagtag-agactttgaagtttgcattgctaagtttccttctacatcgtttatc |
103 |
Q |
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|||| ||| |||||||||||||||||||||||||| | ||||||||||||||| ||||||| ||||||||||| ||||||| || ||||||||||| |
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| T |
38646576 |
aggatcactgacaatagtgcaaacacagtcaccaaaaaccatggaggcagtaggagactttaaagtttgcattaataagttttctatcccatcgtttatc |
38646477 |
T |
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| Q |
104 |
atctattactggttgtatacaatcccttctgtagccttccttgtagtcgcgccttgaccaactccatgtccaatggaagcaagccggacaaccaaccaac |
203 |
Q |
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| T |
38646476 |
atctgctacgggctggatgcaatcccttccgtagctttccctgtagttgtgccttgaccaactccatgtccaatggaagcaagcccga----caaccaac |
38646381 |
T |
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| Q |
204 |
taacaataacagcaaaaatcaatggactcataagtttcacctattcc-aataaagtaaagaaaat |
267 |
Q |
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|||| |||||||| |||||| | || ||||||||||| |||||||| |||||| |||||||||| |
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| T |
38646380 |
taactataacagcgaaaatctacagattcataagtttctcctattccaaataaaataaagaaaat |
38646316 |
T |
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