View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17839_low_5 (Length: 260)
Name: NF17839_low_5
Description: NF17839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17839_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 8807024 - 8807259
Alignment:
| Q |
2 |
cttatgccacctttaactgctgtagcattcaccatatctgcattcttagcacaaatctccttagaaaagttcctaggaataccaaattccaattttaccc |
101 |
Q |
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| T |
8807024 |
cttatgccacctttaactgctgtagcattcaccatatctgcattcttagcacaaatctccttagaaaagttcctaggaataccaaattccaattttaccc |
8807123 |
T |
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| Q |
102 |
ctcttttacctgaataagaccctctcaaaacagcccaactagaaaatcccctacatccaaattgtgaaaaaacagaaaacccttcaccaatatgccatat |
201 |
Q |
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| T |
8807124 |
ctcttttacctgaataagaccctctcaaaacagcccaactagaaaatcccctacatccaaattgtgaaaaaacagaaaacccttcaccaatatgccatat |
8807223 |
T |
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| Q |
202 |
actatgatcagaaagtggataacaacatccaagaga |
237 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
8807224 |
actatgatcagaaagtggataacaacatccaagaga |
8807259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 22920179 - 22920395
Alignment:
| Q |
2 |
cttatgccacctttaactgctgtagcattcaccatatctgcattcttagcacaaatctccttagaaaagttcctaggaataccaaattccaattttaccc |
101 |
Q |
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||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| || |||||| |
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| T |
22920179 |
cttatgccacctttaactgttgtagcattcaccatatttgtgttcttagcacaaatctccttagaaaagttcataggaatacaaatttccaa-------- |
22920270 |
T |
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| Q |
102 |
ctcttttacctgaataagaccctctcaaaacagcccaactagaaaatcccctacatccaaattgtgaaaaaacagaaaacccttcaccaatatgccatat |
201 |
Q |
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|||||| ||||||||| |||||||||||| || ||||| |||||||||| ||||||| || ||||||| |||||||||||||| || ||||||||| |
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| T |
22920271 |
---ttttacttgaataagaacctctcaaaacaaccaaactaaaaaatcccctgtatccaaactgagaaaaaatagaaaacccttcacaaacatgccatat |
22920367 |
T |
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| Q |
202 |
actatgatcagaaagtggataacaacat |
229 |
Q |
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| ||| |||||||||||||||||||||| |
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| T |
22920368 |
attattatcagaaagtggataacaacat |
22920395 |
T |
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Back To:
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