View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17839_low_6 (Length: 258)
Name: NF17839_low_6
Description: NF17839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17839_low_6 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 10305201 - 10305443
Alignment:
| Q |
1 |
aataaagggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatattttataagcttttgccgttttccatttcacagttattact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10305201 |
aataaagggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattact |
10305300 |
T |
|
| Q |
101 |
ctctaccnnnnnnnn-ccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactgtatgctcagaaaaagacaataagc |
199 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10305301 |
ctctacctttttttttccactcaaaacttggtcaccaactacatatgaagacacatgaaggcagaagcaaacactgtatgctcagaaaaagacaataagc |
10305400 |
T |
|
| Q |
200 |
aaaggcaactttgtcccgtctctaaactttggtaattgaagag |
242 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10305401 |
aaaggcaactttgtcacgtctctaaactttggtaattgaagag |
10305443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 51005027 - 51005264
Alignment:
| Q |
5 |
aagggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatattttataagcttttgccgttttccatttcacagttattactctct |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51005027 |
aagggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagcttttgccattttccatttcacagttattactctct |
51005126 |
T |
|
| Q |
105 |
accnnnnnnnnccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactgtatgctcagaaaaagacaataagcaaagg |
204 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51005127 |
accttttttttccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactatatgctcagaaaaagacaataagcaaagg |
51005226 |
T |
|
| Q |
205 |
caactttgtcccgtctctaaactttggtaattgaagag |
242 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
51005227 |
caactttgtcacgtctctaaactttggtaattgaagag |
51005264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 4251648 - 4251411
Alignment:
| Q |
7 |
gggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatattttataagcttttgccgttttccatttcacagttattactctctac |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4251648 |
gggctatgttatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctctac |
4251549 |
T |
|
| Q |
107 |
cnnnnnnnn--ccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactgtatgctcagaaaaagacaataagcaaagg |
204 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4251548 |
cttttttttttccactcaaaacttggtcaccaactacatatgaagacacatgaaggttgaagcaaacactgtatgctcagaaaaagacaataagcaaagg |
4251449 |
T |
|
| Q |
205 |
caactttgtcccgtctctaaactttggtaattgaagag |
242 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
4251448 |
caactttgtcacgtctctaaactttggtaattgaagag |
4251411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 4246469 - 4246243
Alignment:
| Q |
16 |
tatatgtagcgacaaaaagtctcgcgaatatcccacgaattatattttataagcttttgccgttttccatttcacagttattactctctaccnnnnnnnn |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4246469 |
tatatgtagcgacaaaaagtctcgcgaatatcccacgaattatgttttataagtttttgccgttttccatttcacagttattactctctacctttttttt |
4246370 |
T |
|
| Q |
116 |
ccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactgtatgctcagaaaaagacaataagcaaaggcaactttgtcc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || |
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| T |
4246369 |
ccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacattgtatgctcagaaaaagacaataagcaaagacaactttctca |
4246270 |
T |
|
| Q |
216 |
cgtctctaaactttggtaattgaagag |
242 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
4246269 |
cgtctctaaactttggtaattgaagag |
4246243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 13761283 - 13761515
Alignment:
| Q |
10 |
ctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatattttataagcttttgccgttttccatttcacagttattactctctaccnn |
109 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13761283 |
ctatgctatatgtagcgacaaaaagtttcgcgaatatctcacaaattatgttttataagcttttgccgttttccatttcaaagttattactctctacctt |
13761382 |
T |
|
| Q |
110 |
nnnnnnccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactgtatgctcagaaaaagacaataagcaaaggcaact |
209 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
13761383 |
ttttttccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcagacactgtatgctcagaaaaagacaataagcaaaggcaatt |
13761482 |
T |
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| Q |
210 |
ttgtcccgtctctaaactttggtaattgaagag |
242 |
Q |
| |
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||||| ||||| ||||||||||||||||||||| |
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| T |
13761483 |
ttgtcacgtctttaaactttggtaattgaagag |
13761515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 1814390 - 1814153
Alignment:
| Q |
7 |
gggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatattttataagcttttgccgttttccatttcacagttattactctctac |
106 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1814390 |
gggctatgctatatgtagcgacagaaagtctcgctaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctttac |
1814291 |
T |
|
| Q |
107 |
cnnnnnnnn--ccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactgtatgctcagaaaaagacaataagcaaagg |
204 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
1814290 |
cttttttttttccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactgtatgctgagaaaaagacaataagcaaatg |
1814191 |
T |
|
| Q |
205 |
caactttgtcccgtctctaaactttggtaattgaagag |
242 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||| |
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| T |
1814190 |
caactttgtcacgtctctaaactttggtaattaaagag |
1814153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 142817 - 143044
Alignment:
| Q |
7 |
gggctatgctatatgtagcgacaaaaagtctcgcgaatatcccacgaattatattttataagcttttgccgttttccatttcacagttattactctctac |
106 |
Q |
| |
|
||||||| |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
142817 |
gggctatactatatgtcgcgacaaaaagtatcgcgaatatcccacgaattatgttttataagcttttgccgttttccatttcacagttattactctccac |
142916 |
T |
|
| Q |
107 |
cnnnnnnnn-ccactcaaaacttggtcaccaactacatatgaagacacatgaaggctgaagcaaacactgtatgctcagaaaaagacaataagcaaaggc |
205 |
Q |
| |
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| |||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
142917 |
ctttttttttccactcaaaatttggtcac---------atgaaggcacatgaaggctgaagcaaacactgtatgctcagaaaaagacaataagcaaaggc |
143007 |
T |
|
| Q |
206 |
aactttgtcccgtctctaaactttggtaattgaagag |
242 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
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|
| T |
143008 |
aactttgtcacgtctctaaactttggtaattgaagag |
143044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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