View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_high_103 (Length: 227)
Name: NF1783_high_103
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_high_103 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 51300777 - 51300580
Alignment:
| Q |
12 |
ataatacttattcggaacttatgacattatttattggtctgaagctttctaataatatgggttgcaatcaaatttgttgttatccagactcgaaaactat |
111 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51300777 |
ataatactttttcggaacttatgacattgtttattggtctgaagcttt---ataatatgggttgcaatcaaatttgttgttatccagactcgaaaattat |
51300681 |
T |
|
| Q |
112 |
tattgatattgttactaaatcggttaacaagtaccattgttatggttctggcattgcttgtgttcaagagttattgagaatgaattgggaggtgcagtta |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51300680 |
tattgatattgttactaaatcggttaacaagtaccattgttatggttttggcattgcttgtgttcaagagttattgagaatgaattgggaggtgcagtta |
51300581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 36 - 212
Target Start/End: Original strand, 34721350 - 34721526
Alignment:
| Q |
36 |
cattatttattggtctgaagctttctaataatatgggttgcaatcaaatttgttgttatccagactcgaaaactattattgatattgttactaaatcggt |
135 |
Q |
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|||| ||| ||||| |||||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||| || | |
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| T |
34721350 |
cattgttttttggtttgaagcttgctaataatatgggttgcaatcaagtttgttgctattcagactcgaaaactattattgatattgtttctaagacgat |
34721449 |
T |
|
| Q |
136 |
taacaagtaccattgttatggttctggcattgcttgtgttcaagagttattgagaatgaattgggaggtgcagttat |
212 |
Q |
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|||||||||| |||| |||| ||||| | |||||||||||||||| || || |||||| |||||||||||||||||| |
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| T |
34721450 |
taacaagtactattgctatgcttctgtcgttgcttgtgttcaagatttttttagaatggattgggaggtgcagttat |
34721526 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 19998270 - 19998469
Alignment:
| Q |
12 |
ataatacttattcggaacttatgacattatttattggtctgaagctttctaataatatgggttgcaatcaaatttgttgttatccagactcgaaaactat |
111 |
Q |
| |
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||||||||||| |||| |||||| |||| ||| || |||||||||| |||| ||||| |||||||||||||||||||| || ||||||| |||||||| |
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| T |
19998270 |
ataatacttatgcggagcttatggcattgtttctttttctgaagcttgctaagaatattggttgcaatcaaatttgttgccattcagactcaaaaactat |
19998369 |
T |
|
| Q |
112 |
tattgatattgttactaaatcggttaacaagtaccattgttatggttctggcattgcttgtgttcaagagttattgagaatgaattgggaggtgcagtta |
211 |
Q |
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|||||||||||||||||| | ||||||||||||||||| |||| |||| |||| ||||||||||| |||||||||||||| |||| || ||||||||| |
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| T |
19998370 |
tattgatattgttactaagccagttaacaagtaccattgctatgcttctatcattacttgtgttcaaaagttattgagaatggattgaga-gtgcagtta |
19998468 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 45646002 - 45646202
Alignment:
| Q |
12 |
ataatacttattcggaacttatgacattatttattggtctgaagctttctaataatatgggttgcaatcaaatttgttgttatccagactcgaaaactat |
111 |
Q |
| |
|
||||||||||| ||||||| ||| |||| ||| |||||||||||||| ||||||||| |||||||||||| |||||| ||| ||| ||||||||||| |
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| T |
45646002 |
ataatacttatgcggaactgatggcattgtttcttggtctgaagcttgttaataatatcggttgcaatcaagtttgttcctattaagaatcgaaaactat |
45646101 |
T |
|
| Q |
112 |
tattgatattgttactaaatcggttaacaagtaccattgttatggttctggcattgcttgtgttcaagagttattgagaatgaattgggaggtgcagtta |
211 |
Q |
| |
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|| ||||||||||||||| | |||||||||||||||||||||| || || |||||||| |||||| |||||| | |||||| |||||||| || ||||| |
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| T |
45646102 |
taatgatattgttactaagccagttaacaagtaccattgttatgcttttgtcattgcttatgttcaggagttactaagaatggattgggagatgtagtta |
45646201 |
T |
|
| Q |
212 |
t |
212 |
Q |
| |
|
| |
|
|
| T |
45646202 |
t |
45646202 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 26143785 - 26143925
Alignment:
| Q |
65 |
aatatgggttgcaatcaaatttgttgttatccagactcgaaaacta-ttattgatattgttactaaatcggttaacaagtaccattgttatggttctggc |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||| ||||||||||||||||| | ||| |||| | |
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| T |
26143785 |
aatatgggttgcaatcaaatttgttgttatttagacttgaaaactattttttgatattgttactaagtcggttaacaagtaccactacaatgcctctgtc |
26143884 |
T |
|
| Q |
164 |
attgcttgtgttcaagagttattgagaatgaattgggaggt |
204 |
Q |
| |
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||||| | ||||||||||||||||||||||||||||||||| |
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| T |
26143885 |
attgcatatgttcaagagttattgagaatgaattgggaggt |
26143925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 212
Target Start/End: Complemental strand, 1515162 - 1515015
Alignment:
| Q |
65 |
aatatgggttgcaatcaaatttgttgttatccagactcgaaaactattattgatattgttactaaatcggttaacaagtaccattgttatggttctggca |
164 |
Q |
| |
|
||||| ||||||||||| ||||||| ||| | |||||||||||| ||||||||||| |||||| | |||||||||| ||| | ||||| || || || |
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| T |
1515162 |
aatattggttgcaatcatatttgttcctattcgaactcgaaaactactattgatattgctactaagcctgttaacaagtgccactattatgtttttgtca |
1515063 |
T |
|
| Q |
165 |
ttgcttgtgttcaagagttattgagaatgaattgggaggtgcagttat |
212 |
Q |
| |
|
|||||| || |||||||||| |||||| || ||||||||||||||| |
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| T |
1515062 |
ttgcttctgcaaaagagttattaagaatggatggggaggtgcagttat |
1515015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 40458434 - 40458490
Alignment:
| Q |
99 |
actcgaaaactattattgatattgttactaaatcggttaacaagtaccattgttatg |
155 |
Q |
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||||||||||||||||||||||||||||| | || |||||||||||| | |||||| |
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| T |
40458434 |
actcgaaaactattattgatattgttacttagccgtttaacaagtaccgtcgttatg |
40458490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 42296433 - 42296510
Alignment:
| Q |
135 |
ttaacaagtaccattgttatggttctggcattgcttgtgttcaagagttattgagaatgaattgggaggtgcagttat |
212 |
Q |
| |
|
|||||||||| | ||| |||| ||| | ||||||||||||| | || |||||||||||| ||||| ||||||| |||| |
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| T |
42296433 |
ttaacaagtatcgttgctatgcttcagtcattgcttgtgtttaggatttattgagaatggattggaaggtgcatttat |
42296510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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