View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1783_high_106 (Length: 226)

Name: NF1783_high_106
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1783_high_106
NF1783_high_106
[»] chr1 (5 HSPs)
chr1 (42-220)||(36118447-36118625)
chr1 (7-41)||(34492237-34492271)
chr1 (7-41)||(52331407-52331441)
chr1 (7-41)||(52331748-52331782)
chr1 (8-41)||(7710044-7710077)
[»] chr3 (6 HSPs)
chr3 (9-46)||(33794774-33794811)
chr3 (7-41)||(2439770-2439804)
chr3 (7-41)||(5048345-5048379)
chr3 (8-41)||(33794434-33794467)
chr3 (8-41)||(40560801-40560834)
chr3 (9-41)||(14784064-14784096)
[»] chr7 (3 HSPs)
chr7 (6-41)||(24825559-24825594)
chr7 (7-41)||(24825901-24825935)
chr7 (7-41)||(37873417-37873451)
[»] scaffold0291 (1 HSPs)
scaffold0291 (7-41)||(10954-10988)
[»] chr8 (3 HSPs)
chr8 (7-41)||(3305960-3305994)
chr8 (8-41)||(3068774-3068807)
chr8 (8-41)||(3069116-3069149)
[»] chr6 (7 HSPs)
chr6 (7-41)||(16368641-16368675)
chr6 (7-41)||(29847020-29847054)
chr6 (7-41)||(33746712-33746746)
chr6 (10-39)||(20582638-20582667)
chr6 (8-41)||(29846789-29846822)
chr6 (9-41)||(16368943-16368975)
chr6 (9-41)||(16766289-16766321)
[»] chr2 (3 HSPs)
chr2 (7-41)||(4731715-4731749)
chr2 (8-41)||(12414179-12414212)
chr2 (8-41)||(12426239-12426272)
[»] scaffold1408 (1 HSPs)
scaffold1408 (7-40)||(1745-1778)
[»] scaffold0428 (2 HSPs)
scaffold0428 (7-40)||(7491-7524)
scaffold0428 (7-40)||(7816-7849)
[»] chr5 (3 HSPs)
chr5 (8-41)||(31156235-31156268)
chr5 (8-41)||(39760424-39760457)
chr5 (9-41)||(31155685-31155717)
[»] chr4 (6 HSPs)
chr4 (7-40)||(15874229-15874262)
chr4 (8-41)||(23254719-23254752)
chr4 (8-41)||(41316240-41316273)
chr4 (8-41)||(42305905-42305938)
chr4 (9-41)||(23254377-23254409)
chr4 (9-41)||(38485211-38485243)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 36118447 - 36118625
Alignment:
Q  42 cataatttaccataagtcccaacaaaaatattaactgcattaggttgtaagaagttggtcattacaagaccaaacactccattgatgcgctgcactctct 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| |||    
T  36118447 cataatttaccataagtcccaacaaaaatattaactgcattaggttgtaagaagttggtcattataagaccaaacactccactaatgcgctgcactttct 36118546  T
Q  142 tcttttgattttatttatagccaatgttcattcctttactttctaaactttcgatgtgggacatcagttatgtatatta 220  Q
    | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36118547 tgttttgattttatttatagccaattttcattcctttactttctaaactttcgatgtgggacatcagttatgtatatta 36118625  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 34492271 - 34492237
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||||| ||||||||||||||||||||||||    
T  34492271 gccatatttgcagggacgagtgcaatatttaagcc 34492237  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 52331441 - 52331407
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||||| ||||||||||||||||||||||||    
T  52331441 gccatatttgcagggacgagtgcaatatttaagcc 52331407  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 52331748 - 52331782
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||||| ||||||||||||||||||||||||    
T  52331748 gccatatttgcagggacgagtgcaatatttaagcc 52331782  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 7710044 - 7710077
Alignment:
Q  8 ccatatttgtagggacgagtgcaatatttaagcc 41  Q
    ||||||||| ||||||||||||||||||||||||    
T  7710044 ccatatttgcagggacgagtgcaatatttaagcc 7710077  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 33794774 - 33794811
Alignment:
Q  9 catatttgtagggacgagtgcaatatttaagcccataa 46  Q
    |||||||| |||||||||||||||||||||||||||||    
T  33794774 catatttgcagggacgagtgcaatatttaagcccataa 33794811  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 2439804 - 2439770
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||||| ||||||||||||||||||||||||    
T  2439804 gccatatttgcagggacgagtgcaatatttaagcc 2439770  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 5048345 - 5048379
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||||| ||||||||||||||||||||||||    
T  5048345 gccatatttgcagggacgagtgcaatatttaagcc 5048379  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 33794467 - 33794434
Alignment:
Q  8 ccatatttgtagggacgagtgcaatatttaagcc 41  Q
    ||||||||| ||||||||||||||||||||||||    
T  33794467 ccatatttgcagggacgagtgcaatatttaagcc 33794434  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 40560801 - 40560834
Alignment:
Q  8 ccatatttgtagggacgagtgcaatatttaagcc 41  Q
    ||||||||| ||||||||||||||||||||||||    
T  40560801 ccatatttgcagggacgagtgcaatatttaagcc 40560834  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 14784064 - 14784096
Alignment:
Q  9 catatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||| ||||||||||||||||||||||||    
T  14784064 catatttgcagggacgagtgcaatatttaagcc 14784096  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 24825594 - 24825559
Alignment:
Q  6 agccatatttgtagggacgagtgcaatatttaagcc 41  Q
    ||||||||||| ||||||||||||||||||||||||    
T  24825594 agccatatttgcagggacgagtgcaatatttaagcc 24825559  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 24825901 - 24825935
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||||| ||||||||||||||||||||||||    
T  24825901 gccatatttgcagggacgagtgcaatatttaagcc 24825935  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 37873451 - 37873417
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||||| ||||||||||||||||||||||||    
T  37873451 gccatatttgcagggacgagtgcaatatttaagcc 37873417  T

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Target: scaffold0291 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 10988 - 10954
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||||| ||||||||||||||||||||||||    
T  10988 gccatatttgcagggacgagtgcaatatttaagcc 10954  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 3305960 - 3305994
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||||| ||||||||||||||||||||||||    
T  3305960 gccatatttgcagggacgagtgcaatatttaagcc 3305994  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 3068807 - 3068774
Alignment:
Q  8 ccatatttgtagggacgagtgcaatatttaagcc 41  Q
    ||||||||| ||||||||||||||||||||||||    
T  3068807 ccatatttgcagggacgagtgcaatatttaagcc 3068774  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 3069116 - 3069149
Alignment:
Q  8 ccatatttgtagggacgagtgcaatatttaagcc 41  Q
    ||||||||| ||||||||||||||||||||||||    
T  3069116 ccatatttgcagggacgagtgcaatatttaagcc 3069149  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 16368675 - 16368641
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||||| ||||||||||||||||||||||||    
T  16368675 gccatatttgcagggacgagtgcaatatttaagcc 16368641  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 29847020 - 29847054
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||||| ||||||||||||||||||||||||    
T  29847020 gccatatttgcagggacgagtgcaatatttaagcc 29847054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 33746746 - 33746712
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||||| ||||||||||||||||||||||||    
T  33746746 gccatatttgcagggacgagtgcaatatttaagcc 33746712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 20582667 - 20582638
Alignment:
Q  10 atatttgtagggacgagtgcaatatttaag 39  Q
    ||||||||||||||||||||||||||||||    
T  20582667 atatttgtagggacgagtgcaatatttaag 20582638  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 29846822 - 29846789
Alignment:
Q  8 ccatatttgtagggacgagtgcaatatttaagcc 41  Q
    ||||||||| ||||||||||||||||||||||||    
T  29846822 ccatatttgcagggacgagtgcaatatttaagcc 29846789  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 16368943 - 16368975
Alignment:
Q  9 catatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||| ||||||||||||||||||||||||    
T  16368943 catatttgcagggacgagtgcaatatttaagcc 16368975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 16766321 - 16766289
Alignment:
Q  9 catatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||| ||||||||||||||||||||||||    
T  16766321 catatttgcagggacgagtgcaatatttaagcc 16766289  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 4731749 - 4731715
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||||| ||||||||||||||||||||||||    
T  4731749 gccatatttgcagggacgagtgcaatatttaagcc 4731715  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 12414179 - 12414212
Alignment:
Q  8 ccatatttgtagggacgagtgcaatatttaagcc 41  Q
    ||||||||| ||||||||||||||||||||||||    
T  12414179 ccatatttgcagggacgagtgcaatatttaagcc 12414212  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 12426239 - 12426272
Alignment:
Q  8 ccatatttgtagggacgagtgcaatatttaagcc 41  Q
    ||||||||| ||||||||||||||||||||||||    
T  12426239 ccatatttgcagggacgagtgcaatatttaagcc 12426272  T

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Target: scaffold1408 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 1778 - 1745
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagc 40  Q
    |||||||||| |||||||||||||||||||||||    
T  1778 gccatatttgcagggacgagtgcaatatttaagc 1745  T

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Target: scaffold0428 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 7524 - 7491
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagc 40  Q
    |||||||||| |||||||||||||||||||||||    
T  7524 gccatatttgcagggacgagtgcaatatttaagc 7491  T

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Target: scaffold0428; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 7816 - 7849
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagc 40  Q
    |||||||||| |||||||||||||||||||||||    
T  7816 gccatatttgcagggacgagtgcaatatttaagc 7849  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 31156235 - 31156268
Alignment:
Q  8 ccatatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||||||||||||| |||||||||||||||    
T  31156235 ccatatttgtagggacgaatgcaatatttaagcc 31156268  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 39760457 - 39760424
Alignment:
Q  8 ccatatttgtagggacgagtgcaatatttaagcc 41  Q
    ||||||||| ||||||||||||||||||||||||    
T  39760457 ccatatttgcagggacgagtgcaatatttaagcc 39760424  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 31155685 - 31155717
Alignment:
Q  9 catatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||| ||||||||||||||||||||||||    
T  31155685 catatttgcagggacgagtgcaatatttaagcc 31155717  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 15874262 - 15874229
Alignment:
Q  7 gccatatttgtagggacgagtgcaatatttaagc 40  Q
    |||||||||| |||||||||||||||||||||||    
T  15874262 gccatatttgcagggacgagtgcaatatttaagc 15874229  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 23254719 - 23254752
Alignment:
Q  8 ccatatttgtagggacgagtgcaatatttaagcc 41  Q
    ||||||||| ||||||||||||||||||||||||    
T  23254719 ccatatttgcagggacgagtgcaatatttaagcc 23254752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 41316240 - 41316273
Alignment:
Q  8 ccatatttgtagggacgagtgcaatatttaagcc 41  Q
    ||||||||| ||||||||||||||||||||||||    
T  41316240 ccatatttgcagggacgagtgcaatatttaagcc 41316273  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 42305938 - 42305905
Alignment:
Q  8 ccatatttgtagggacgagtgcaatatttaagcc 41  Q
    ||||||||| ||||||||||||||||||||||||    
T  42305938 ccatatttgcagggacgagtgcaatatttaagcc 42305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 23254409 - 23254377
Alignment:
Q  9 catatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||| ||||||||||||||||||||||||    
T  23254409 catatttgcagggacgagtgcaatatttaagcc 23254377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 38485211 - 38485243
Alignment:
Q  9 catatttgtagggacgagtgcaatatttaagcc 41  Q
    |||||||| ||||||||||||||||||||||||    
T  38485211 catatttgcagggacgagtgcaatatttaagcc 38485243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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