View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_high_13 (Length: 573)
Name: NF1783_high_13
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 130 - 557
Target Start/End: Original strand, 3000338 - 3000761
Alignment:
| Q |
130 |
tggtagattcatatgttgattaaggtgatcaagataaattgaacaagaggaggacgggagagattcggtatgaatgagaccagaatttacgcttgccttt |
229 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
3000338 |
tggtagattcagatgttgattaaggtgatcaagataaattgaacaagaggaggacgagagagattcggtatgaatgagaccggaatttatgcttgccttt |
3000437 |
T |
|
| Q |
230 |
gatgtatatatgtagctaatatgtatgagagttaggttaatgaagttaatattaggcttgcttcgttgaatggtattcgcgataagtttatcggtgttgc |
329 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3000438 |
gatgtat----gtagctaatatgtatgagagtttggttaatgaagttaatattaggcttgcttcgttgaatggtattcacgataagtttatcggtgttgc |
3000533 |
T |
|
| Q |
330 |
tcttgaagctgcgattggattgcatagaagactcgcgaagaaatttcctaaaaaaggtccttttatatacaatttagatttaatttcatttgcttgtagc |
429 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3000534 |
tcttgaagctgcgattggattgcatagaagacttgcgaagaaatttcctaaaaaaggtccttttatattcaatttagatttaatttcatttgcttgtagc |
3000633 |
T |
|
| Q |
430 |
tatgtagtgttggaagtggaatttttgtgctatgtatataatgttttattgcttagggtcatatgatatattggttgtgtaacatttaatgtattctatg |
529 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3000634 |
tatatagtgttggaagtggaatttttgtgctatgtatataatgttttattgcttagggtcatatgatgtattggttgtgtaacatttaatgtattctatg |
3000733 |
T |
|
| Q |
530 |
tcgttcctcaacaggaccatgtacatat |
557 |
Q |
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|||||| ||||||||||||||||||||| |
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| T |
3000734 |
tcgttcttcaacaggaccatgtacatat |
3000761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 2999298 - 2999418
Alignment:
| Q |
10 |
ttattctcatgttaatgagtgttttatttttcctacacaacagagatcatgatgacttgaaagggtgatctcagttggaacaggagatgaagatgtagag |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2999298 |
ttattctcatgttaatgagtgttttatttttcctacaca---gagatcatgatgacgtgaaagggtgatctcagttggaacaggagatgaagatgtagag |
2999394 |
T |
|
| Q |
110 |
ctaggagtttagtagtcagttggt |
133 |
Q |
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||| |||||||||||||||||||| |
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| T |
2999395 |
ctacgagtttagtagtcagttggt |
2999418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 130 - 278
Target Start/End: Complemental strand, 14895823 - 14895679
Alignment:
| Q |
130 |
tggtagattcatatgttgattaaggtgatcaagataaattgaacaagaggaggacgggagagattcggtatgaatgagaccagaatttacgcttgccttt |
229 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||| ||||| ||||||||| |
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| T |
14895823 |
tggtagattccaatgttgattaaggtgatcaagataaattgaacaagaggaagacgagagagattcagtatgaaggagaccccaatttcgccttgccttt |
14895724 |
T |
|
| Q |
230 |
gatgtatatatgtagctaatatgtatgagagttaggttaatgaagttaa |
278 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14895723 |
gatg----tatgtagctaatatgtatgagagtttggttaatgaagttaa |
14895679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 291 - 402
Target Start/End: Complemental strand, 14895527 - 14895416
Alignment:
| Q |
291 |
ttcgttgaatggtattcgcgataagtttatcggtgttgctcttgaagctgcgattggattgcatagaagactcgcgaagaaatttcctaaaaaaggtcct |
390 |
Q |
| |
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|||||||||||||||||| ||||||| |||| ||||||||||| ||||||| ||| ||||||||| | ||| |||||| |||||||||||||||||| |
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| T |
14895527 |
ttcgttgaatggtattcgtgataagtctatcagtgttgctcttaaagctgcaggtggtttgcatagagggctcatgaagaattttcctaaaaaaggtcct |
14895428 |
T |
|
| Q |
391 |
tttatatacaat |
402 |
Q |
| |
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||||||| |||| |
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|
| T |
14895427 |
tttatattcaat |
14895416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 32705980 - 32706088
Alignment:
| Q |
10 |
ttattctcatgttaatgagtgttttatttttcctacacaacagagatcatgatgacttgaaagggtgatctcagttggaacaggagatgaagatgtagag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||| || | ||||||||||||||||||| |
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| T |
32705980 |
ttattctcatgttaatgagtgttttatttttcctacgta---gagatcatgatgacgtgaaagggtgatctcaattactataggagatgaagatgtagag |
32706076 |
T |
|
| Q |
110 |
ctaggagtttag |
121 |
Q |
| |
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|||||| ||||| |
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| T |
32706077 |
ctaggattttag |
32706088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 32718180 - 32718293
Alignment:
| Q |
10 |
ttattctcatgttaatgagtgttttatttttcctacacaacagagatcatgatgacttgaaagggtgatctcagttggaacaggagatgaaga--tgtag |
107 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||| || |||||||||| ||| |||||||||| |||| |||| |||||||||| ||| ||||| |
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| T |
32718180 |
ttattctcatgttaatttgtgttttatttctcctacgca---gagatcatgacgacgtgaaagggtgttctcggttgctacaggagatgtagagttgtag |
32718276 |
T |
|
| Q |
108 |
agctaggagtttagtag |
124 |
Q |
| |
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||||||||||| ||||| |
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| T |
32718277 |
agctaggagttcagtag |
32718293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 32724622 - 32724698
Alignment:
| Q |
50 |
cagagatcatgatgacttgaaagggtgatctcagttggaacaggagatgaaga--tgtagagctaggagtttagtag |
124 |
Q |
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|||||||||||| ||| |||||||||| |||| |||| |||||||||| ||| |||||||||||||||| ||||| |
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| T |
32724622 |
cagagatcatgacgacgtgaaagggtgttctcggttgctacaggagatgtagagttgtagagctaggagttcagtag |
32724698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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