View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_high_16 (Length: 527)
Name: NF1783_high_16
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 7109919 - 7109577
Alignment:
| Q |
18 |
ggagggaggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggctttaaatttnnnnnnntggagatcgaacagtttataaatgagac |
117 |
Q |
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| T |
7109919 |
ggagggaggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggctttagatttaaaaaaatggagattgaacagtttataaacgagac |
7109820 |
T |
|
| Q |
118 |
gacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaatatggatgatcct-----tgat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7109819 |
gacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaatatggatgatcctatggttgat |
7109720 |
T |
|
| Q |
213 |
tttgttgattggaaggaggctaatcaacttatccatcttcctactagaggctctttttacacatggtcgaatagaaggggtggaaatgtttaatacatat |
312 |
Q |
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| T |
7109719 |
tttgttgattggaaggaggctaatcaacttatccatcttcctaccaaaggctctttttacacatggtcgaatagaaggggtggaaatgtttaatacatat |
7109620 |
T |
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| Q |
313 |
aatataaatgactcgatagagccatttgcaatcaacaatggct |
355 |
Q |
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| T |
7109619 |
aatataagtgacttgacagagccatttgcaatcaacaatggct |
7109577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 357 - 509
Target Start/End: Complemental strand, 7109285 - 7109133
Alignment:
| Q |
357 |
atttcttccaaacttattggaacaatgtgaataatgatgtaactaatgcggttttaaatttctttgtagatgactggatgctccctaactacaatgccaa |
456 |
Q |
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| T |
7109285 |
atttcttccaaacttattggaacaatgtgaatactgatgtaactaatgcggttttaaatttctttgtagatgattggatgctccctaactacaatgccaa |
7109186 |
T |
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| Q |
457 |
tgttattattcccatacctaagtttcaaggtgttgactgtgtggagcaatata |
509 |
Q |
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| T |
7109185 |
tgttattattcccatacctaagtttcaaggtattgactgtgtggagcaatata |
7109133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 7110772 - 7110878
Alignment:
| Q |
90 |
tggagatcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttga |
189 |
Q |
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| T |
7110772 |
tggaggtcaaacaatttataaacgaggcgacttataaatagattacattaagattttgagttaaattgtgatgtttctcttacatgtgtggttgcttcga |
7110871 |
T |
|
| Q |
190 |
accaaat |
196 |
Q |
| |
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||||||| |
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| T |
7110872 |
accaaat |
7110878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 9987749 - 9987640
Alignment:
| Q |
98 |
gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaata |
197 |
Q |
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||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||||| ||||| |
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| T |
9987749 |
gaacaatttataaacaagacgagttataaacacattacattaaggttttgggttaact-gtgatgtctctcttacatgtgtgattgctttgaagcaaatg |
9987651 |
T |
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| Q |
198 |
tggatgatcct |
208 |
Q |
| |
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|||| |||||| |
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| T |
9987650 |
tggacgatcct |
9987640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 9986561 - 9986483
Alignment:
| Q |
90 |
tggagatcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctc |
168 |
Q |
| |
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| T |
9986561 |
tggaggtcaaacaatttataaatgatgcgacttataaacacattacattaaagttttgggataaattatgatgtctctc |
9986483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 96 - 178
Target Start/End: Complemental strand, 9992790 - 9992710
Alignment:
| Q |
96 |
tcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgt |
178 |
Q |
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| T |
9992790 |
tcgaacaatttataaacaagacgacttataaacacattacattaagg-tttaagtt-aactatgatgtctcttttacatgtgt |
9992710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 190
Target Start/End: Complemental strand, 9991811 - 9991728
Alignment:
| Q |
107 |
ataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaa |
190 |
Q |
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| T |
9991811 |
ataaacgagacgatttctaagcatattacattaaagttttgggttaaattgtgatgtatcccttagtggtgtggttgctttgaa |
9991728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 26169914 - 26169962
Alignment:
| Q |
25 |
ggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggc |
73 |
Q |
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|||||||||||||||| |||||||||||||||||||| | ||||||||| |
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| T |
26169914 |
ggggattaggccaaaaccccctcaaaaaggaacaaatctgaagttaggc |
26169962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 29873648 - 29873561
Alignment:
| Q |
98 |
gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct |
185 |
Q |
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| T |
29873648 |
gaacattttataagtgggaggactcataaactcattgccttaaggttttgagtaagagtgtgacgtctctctcacttgtgtggttgct |
29873561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 15841477 - 15841390
Alignment:
| Q |
98 |
gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct |
185 |
Q |
| |
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||||| ||| ||| ||||| || | ||||||||||| | ||||||||||| || | | |||||||||||||| || |||||||||||| |
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| T |
15841477 |
gaacactttgtaagtgagaggattcataaacacattgccttaaggttttgggtaagagtgtgatgtctctctcacttgtgtggttgct |
15841390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 16524451 - 16524499
Alignment:
| Q |
137 |
ttaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct |
185 |
Q |
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|||||||||||||| | | |||| |||||||||||| |||||||||||| |
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| T |
16524451 |
ttaaggttttgagtaagagtgtggtgtctctcttacttgtgtggttgct |
16524499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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