View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_high_17 (Length: 504)
Name: NF1783_high_17
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 41706532 - 41707023
Alignment:
| Q |
1 |
tgagcggtgggcccggaggagtacttgggaattatcaacagcaagggtttgaagttgaatatgatcttgaaaagaagcgcgtgggttttgctaggagaaa |
100 |
Q |
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| T |
41706532 |
tgagcggtgggcccggaggagtacttgggaattatcaacagcaagggtttgaagttgaatatgatcttgaaaagaagcgcgtgggttttgctaggagaaa |
41706631 |
T |
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| Q |
101 |
gtgcgcgtcgctttgggatagactcaatcgcgacaaaaactagcgtatatacctgcacctgcacgggtgcatttggataattggattctttcccgtttca |
200 |
Q |
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| T |
41706632 |
gtgcgcgtcgctttgggatagactcaatcgcgacaaaaactagcgtatatacctgcacctgcacgggtgcatttggataattggattctttcccgtttca |
41706731 |
T |
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| Q |
201 |
gacacgggtcgggtcnnnnnnnncttctgtgagaa-taaaattgcttatgcatggttcatccactcgtgtgctcttgagtggtggatgac-gtaactatg |
298 |
Q |
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| T |
41706732 |
gacacgggtcgggtcttatttttcttctgtgagaaataaaattgcttatgcatggttcatacactcgtgtgctcttgagtggtgaatgactgtaactatg |
41706831 |
T |
|
| Q |
299 |
tatttatatgcatgtatannnnnnngttaattaattataataatcttacgtatgcatgaatgtacatatttttattgtttgaatgaggatgttgtcactg |
398 |
Q |
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| T |
41706832 |
tatttatatgcatgtatatttttttgttaattaattataataatcttacgtatgcatgaatgtacatatttttattgtttgaatgaggatgttgtcactg |
41706931 |
T |
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| Q |
399 |
ttaagatgatgacatgagaaaatctagccccaatatttttcagttgtgtggaatgaaccaggtacacaatccaaggtatggaatgaaattcc |
490 |
Q |
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| T |
41706932 |
ttaagatgatgacatgagaaaatctagccccaatatttttcagttgtgtggaatgaaccaggtacacaatccaaggtatggaatgaaattcc |
41707023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 3743347 - 3743253
Alignment:
| Q |
27 |
gggaattatcaacagcaagggtttgaagttgaatatgatcttgaaaagaagcgcgtgggttttgctaggagaaagtgcgcgtcgctttgggatag |
121 |
Q |
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|||||||||||||||||||||||||| || | |||||||| || || |||||||||| || || | || | ||||||||| |||||||||||| |
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| T |
3743347 |
gggaattatcaacagcaagggtttgaggtggtttatgatctggagaaagagcgcgtggggttcgcgaagaaagagtgcgcgttgctttgggatag |
3743253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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