View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1783_high_19 (Length: 487)

Name: NF1783_high_19
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1783_high_19
NF1783_high_19
[»] chr3 (3 HSPs)
chr3 (6-471)||(42743483-42743937)
chr3 (93-145)||(21143841-21143893)
chr3 (94-151)||(46560640-46560696)
[»] chr7 (3 HSPs)
chr7 (93-156)||(46278623-46278686)
chr7 (93-166)||(10407748-10407819)
chr7 (123-157)||(26866656-26866690)
[»] chr2 (4 HSPs)
chr2 (93-166)||(42467691-42467764)
chr2 (96-156)||(33624748-33624808)
chr2 (93-158)||(38501162-38501227)
chr2 (93-166)||(37494918-37494989)
[»] chr1 (2 HSPs)
chr1 (93-166)||(19808881-19808954)
chr1 (93-169)||(1519779-1519852)
[»] chr5 (2 HSPs)
chr5 (93-166)||(3290039-3290110)
chr5 (123-156)||(43432516-43432549)
[»] chr4 (1 HSPs)
chr4 (104-162)||(5079137-5079195)
[»] chr8 (1 HSPs)
chr8 (124-156)||(11792217-11792249)


Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 6 - 471
Target Start/End: Complemental strand, 42743937 - 42743483
Alignment:
Q  6 aaataatactgaactcattaacaactattttcagatgtatattcaaaaacaaattgtgattaagagtaattgaagacataaaaatcaatgtatatttgaa 105  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  42743937 aaataattttgaactcattaacaactattttcagatgtatattcaaaaacaaattgtgattaagtgtaattgaagacataaaaatcaatgtatgtttgaa 42743838  T
Q  106 cacaatttgaatggttataatgaatatcatgtatatttgaacacctaaaaattatggttaacgaagtttagcaaatgcgttttgactaattatattcgtt 205  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  42743837 -----------tggttataatgaatatcatgtatatttgaacacctaaaaattatggttaacgaagtttagcaaatgagttttgactaattatatccgtt 42743749  T
Q  206 tacatgtaactatcgacatatttcagcgcattgaaacataatattggcttacaggaagccggtctggcgaaaaaggaagccatggttggacatgatcttt 305  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42743748 tacatgtaactatcgacatatttaagcgcattgaaacataatattggcttacaggaagccggtctggcgaaaaaggaagccatggttggacatgatcttt 42743649  T
Q  306 tggatgcttctaagctttaagaaaacttcctttcctttggaataagaatgtccaaaacaaacccttgaaataacatcagctgaaaagcccctcaaatcag 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42743648 tggatgcttctaagctttaagaaaacttcctttcctttggaataagaatgtccaaaacaaacccttgaaataacatcagctgaaaagcccctcaaatcag 42743549  T
Q  406 catcaactttaacttcagcttttgcacctccttggtcctctataatttgttcccattttaagagta 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42743548 catcaactttaacttcagcttttgcacctccttggtcctctataatttgttcccattttaagagta 42743483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 21143893 - 21143841
Alignment:
Q  93 atgtatatttgaacacaatttgaatggttataatgaatatcatgtatatttga 145  Q
    ||||||||||||| | || ||| ||||||||||||||||||||||||||||||    
T  21143893 atgtatatttgaaaataacttggatggttataatgaatatcatgtatatttga 21143841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 46560640 - 46560696
Alignment:
Q  94 tgtatatttgaacacaatttgaatggttataatgaatat-catgtatatttgaacacct 151  Q
    ||||||||||||||||||||| |||||  ||||||||||  ||||||||||||||||||    
T  46560640 tgtatatttgaacacaatttggatggt--taatgaatatatatgtatatttgaacacct 46560696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 46278686 - 46278623
Alignment:
Q  93 atgtatatttgaacacaatttgaatggttataatgaatatcatgtatatttgaacacctaaaaa 156  Q
    |||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  46278686 atgtatatttgagcacaatttcaatggttataatgaatattatgtatatttgaacacctaaaaa 46278623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 10407748 - 10407819
Alignment:
Q  93 atgtatatttgaacacaatttgaatggttataatgaatatcatgtatatttgaacacctaaaaattatggttaa 166  Q
    |||||||||  ||||||||||| |||||||  || |||||||||||||||||||| |||||| |||||| ||||    
T  10407748 atgtatattcaaacacaatttggatggtta--ataaatatcatgtatatttgaacgcctaaacattatgattaa 10407819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 26866690 - 26866656
Alignment:
Q  123 taatgaatatcatgtatatttgaacacctaaaaat 157  Q
    ||||||||||||||||||||||||||||| |||||    
T  26866690 taatgaatatcatgtatatttgaacacctgaaaat 26866656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 42467764 - 42467691
Alignment:
Q  93 atgtatatttgaacacaatttgaatggttataatgaatatcatgtatatttgaacacctaaaaattatggttaa 166  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||| || |||||||| ||||| ||||||||    
T  42467764 atgtatatttgaacacaatttggatggttataatggatatcatgtattttagaacacctcaaaatcatggttaa 42467691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 33624808 - 33624748
Alignment:
Q  96 tatatttgaacacaatttgaatggttataatgaatatcatgtatatttgaacacctaaaaa 156  Q
    ||||||||||||  ||||| |||||||| || |||||||||||||||||||||||||||||    
T  33624808 tatatttgaacagtatttggatggttattataaatatcatgtatatttgaacacctaaaaa 33624748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 38501162 - 38501227
Alignment:
Q  93 atgtatatttgaacacaatttgaatggttataatgaatatcatgtatatttgaacacctaaaaatt 158  Q
    |||||||||||||||||||||| ||| |||||||| | |||| ||||| || |||||||| |||||    
T  38501162 atgtatatttgaacacaatttggatgattataatggaaatcacgtatacttaaacacctagaaatt 38501227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 37494989 - 37494918
Alignment:
Q  93 atgtatatttgaacacaatttgaatggttataatgaatatcatgtatatttgaacacctaaaaattatggttaa 166  Q
    ||||||||||||||||||||| |||| |  ||||| ||||| | |||||||||| |||| |||||| |||||||    
T  37494989 atgtatatttgaacacaatttaaatgat--taatggatatcttatatatttgaaaacctgaaaattgtggttaa 37494918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 19808954 - 19808881
Alignment:
Q  93 atgtatatttgaacacaatttgaatggttataatgaatatcatgtatatttgaacacctaaaaattatggttaa 166  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||| |||| ||||||| ||| | ||||||||    
T  19808954 atgtatatttgaacatgatttgaatggttataattaatatcatgtagattttaacacctgaaagtcatggttaa 19808881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 1519779 - 1519852
Alignment:
Q  93 atgtatatttgaacacaatttgaatggttataatgaatatcatgtatatttgaacacctaaaaattatggttaacga 169  Q
    |||||||||||||||||| ||  ||| |||  |||||||| |||||||||||||||| |||| ||| ||||||||||    
T  1519779 atgtatatttgaacacaaatttcatgatta--atgaatat-atgtatatttgaacacttaaagattgtggttaacga 1519852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 3290039 - 3290110
Alignment:
Q  93 atgtatatttgaacacaatttgaatggttataatgaatatcatgtatatttgaacacctaaaaattatggttaa 166  Q
    |||||||||||||||||||||||||| |  ||||  ||||||| ||||||||||||| | ||||| ||| ||||    
T  3290039 atgtatatttgaacacaatttgaatgat--taattgatatcatctatatttgaacacttgaaaatcatgattaa 3290110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 43432516 - 43432549
Alignment:
Q  123 taatgaatatcatgtatatttgaacacctaaaaa 156  Q
    ||||||||||||||||||||||||||||| ||||    
T  43432516 taatgaatatcatgtatatttgaacacctgaaaa 43432549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 5079137 - 5079195
Alignment:
Q  104 aacacaatttgaatggttataatgaatatcatgtatatttgaacacctaaaaattatgg 162  Q
    |||| |||||| || ||||||||| | ||||| ||||||||||||||| ||||||||||    
T  5079137 aacataatttggatagttataatggacatcatctatatttgaacacctgaaaattatgg 5079195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 11792249 - 11792217
Alignment:
Q  124 aatgaatatcatgtatatttgaacacctaaaaa 156  Q
    |||||||||||||||||||||||||||| ||||    
T  11792249 aatgaatatcatgtatatttgaacacctgaaaa 11792217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University