View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_high_20 (Length: 475)
Name: NF1783_high_20
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_high_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 15 - 475
Target Start/End: Complemental strand, 42088303 - 42087843
Alignment:
| Q |
15 |
cagagacgtgtggcatgaacgtgacaactcgtgacaagtaaagagttccttctacaaatgaaatagatagggccattagatgtcctacaacaagtaaact |
114 |
Q |
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| T |
42088303 |
cagagacgtgtggcatgaacgtgacaactcgtgacaagtaaagagttccttctacaaatgaaatagataaggccattagatgtcctacaacaagtaaact |
42088204 |
T |
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| Q |
115 |
aacaaagataatttcttgagtgcttcttttccaactctatgagcttctcgtgtgttttatgcagtttaggttatataatccgaacaatacagacagccta |
214 |
Q |
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| T |
42088203 |
aacaaagataatttcttgagtgcttcttttccaactctatgagtttctcgtgtgtcttatgcagttcaggttatataatctgaacgatacagacattccc |
42088104 |
T |
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| Q |
215 |
taaaaaattcttaaaacgcgtttgaaatattttgaatgttaaaattagaataggacgcatgagaaactcgtagagtgagaaaagtaacggtctacgtttt |
314 |
Q |
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| T |
42088103 |
taaaaacttctaaaaatacgtttgaaatattttagattttaaaatcagaataggacgcacgaaaaactcatagagtgagaaaagtaacggtctactttct |
42088004 |
T |
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| Q |
315 |
ttctacctagcaaataaaaagatagtaagcaccacacgttttctagtaccataagtcactatgatccttcctttacaagttccaataacgtgatacaaat |
414 |
Q |
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| T |
42088003 |
ttctacctagcaaataaaaagatagtaagcaccacacgttttctagtaccataagtcactatgatccttcctttacaagttccaataacgtgatacaaat |
42087904 |
T |
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| Q |
415 |
aaccttgacatacattcttttttagctatatatattccacatcctattccccctcaccaaa |
475 |
Q |
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| T |
42087903 |
aaccttgacatacattcttttttagctatatatattctacatcctattccccctcaacaaa |
42087843 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 13019597 - 13019661
Alignment:
| Q |
135 |
tgcttcttttccaactctatgagcttctcgtgtgttttatgcagtttaggttatataatccgaac |
199 |
Q |
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| T |
13019597 |
tgcttcttttcccactctatgaacttctcatgcgtcctatgcagtttggattatagaatccgaac |
13019661 |
T |
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