View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1783_high_22 (Length: 441)
Name: NF1783_high_22
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_high_22 |
 | |
|
| [»] scaffold0913 (2 HSPs) |
| | |
|
| [»] scaffold0898 (2 HSPs) |
| | |
|
| [»] scaffold0227 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 2 - 429
Target Start/End: Complemental strand, 44022052 - 44021626
Alignment:
| Q |
2 |
tgaagttaaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagta |
101 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44022052 |
tgaagttaaccattcagtttttgccaaaacaaaaatgtctgtatcatccattatacaaactcctattcccactttattagaaagctggaagaaagaagca |
44021953 |
T |
|
| Q |
102 |
tcaatattgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44021952 |
tcaatattgcacttaaatcttccttcagctggtttgatccatttcacatttccttcttgcagcggttgtgcacaagatgtattacaaatcctacgtgcat |
44021853 |
T |
|
| Q |
202 |
cttgccaatcgtgaagcataacttttgctctctcgacactataaacttgacaaaaacacttaaaataatttttctctctcattcattcatannnnnnnat |
301 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44021852 |
ct----aatcgtgaagcataacttttgctctctcgacactataaacttgacaaaaacacttaaaataatttttctctctcattcattcatattttttt-t |
44021758 |
T |
|
| Q |
302 |
atatatgtgaagggagcaaatagctcacttaatcagggac----agagtagttagtatgacccaatttaaaaaatttgatatacaaaatttctcaaatga |
397 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44021757 |
atatatgtgaagtgagtaaatagttcacttaatcagggacacagagagtagttagaatgacccaatttaaaaaatttgatatacaaaatttctcaaatga |
44021658 |
T |
|
| Q |
398 |
nnnnnnnacttttgaaacctcacctaattaat |
429 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
44021657 |
tttgtttacttttgaaacctcacctaattaat |
44021626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 32922925 - 32922699
Alignment:
| Q |
9 |
aaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatat |
108 |
Q |
| |
|
|||||||||||||| |||||||||||| || || |||| || |||||||||||| |||||||| | ||||| |||| ||| ||||||||| |||||||| |
|
|
| T |
32922925 |
aaccattcagtttttgccaaaacaaaagtgcctacatcatcccttatacaaactcttattcccagtctattataaagatgggagaaagaagcatcaatat |
32922826 |
T |
|
| Q |
109 |
tgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgcca |
208 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| ||| |||||||| ||| |
|
|
| T |
32922825 |
tgcacttaaatattccttcagttggtttgatccatttcacatttcctacttgtcgcggttgtgcacatgatgtattacaaatcttacatgcatcttacca |
32922726 |
T |
|
| Q |
209 |
atcgtgaagcataacttttgctctctc |
235 |
Q |
| |
|
||| |||| |||| |||| ||||||| |
|
|
| T |
32922725 |
atcatgaaacatagattttactctctc |
32922699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 12 - 155
Target Start/End: Original strand, 30939873 - 30940016
Alignment:
| Q |
12 |
cattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatattgc |
111 |
Q |
| |
|
||||||||||| |||||||| ||| || ||||||| || |||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
30939873 |
cattcagtttttgccaaaacgaaagtgcatgtatcatcccttatacaaactcttattcccactttatttgaaagctgggagaaagaagtatcaatattgc |
30939972 |
T |
|
| Q |
112 |
acttaaatcttccttcagctggtttgatccatttcacatttcct |
155 |
Q |
| |
|
|||||||||||| |||||||| ||| || |||||||||||||| |
|
|
| T |
30939973 |
acttaaatcttctttcagctgatttaatttatttcacatttcct |
30940016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 102 - 235
Target Start/End: Complemental strand, 42131842 - 42131712
Alignment:
| Q |
102 |
tcaatattgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcat |
201 |
Q |
| |
|
||||||||||||||||||| || || ||||||||||||| |||||||||||||| |||| |||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
42131842 |
tcaatattgcacttaaatcctcttttagctggtttgatctatttcacatttccttcttgtcgcggttgtgcacaagatgtattgcaaaacctacgtgca- |
42131744 |
T |
|
| Q |
202 |
cttgccaatcgtgaagcataacttttgctctctc |
235 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |
|
|
| T |
42131743 |
--tgccaatcatgaagcatagtttttgctctctc |
42131712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 43896282 - 43896079
Alignment:
| Q |
13 |
attcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatattgca |
112 |
Q |
| |
|
|||||||||| | |||||||||| | | ||||| | || |||||||| ||| |||| |||| |||||||||||||| ||||| || |||||||| ||| |
|
|
| T |
43896282 |
attcagtttttgtcaaaacaaaagtttatgtataatcccttatacaacctcatatttccaccctattagaaagctgggagaaaaaac-atcaatatagca |
43896184 |
T |
|
| Q |
113 |
cttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgccaatcg |
212 |
Q |
| |
|
||||||||| || ||||||| |||||||||||| ||||||| | |||| |||| | ||||| |||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
43896183 |
cttaaatctcccctcagctgctttgatccatttaacatttctttcttgtcgcggctatgcacgagatgtattacatatcctacatgcatcttgtcaatca |
43896084 |
T |
|
| Q |
213 |
tgaag |
217 |
Q |
| |
|
||||| |
|
|
| T |
43896083 |
tgaag |
43896079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 39220780 - 39220664
Alignment:
| Q |
9 |
aaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatat |
108 |
Q |
| |
|
|||||||||||||| || ||||||||| || ||||||| ||||||| || ||||||||||| ||| |||| | | | | | ||||||| |||||||| |
|
|
| T |
39220780 |
aaccattcagttttcgctaaaacaaaagtgcatgtatcatccattatgcatactcctattccaactctattggtttgtttggaaaaagaagcatcaatat |
39220681 |
T |
|
| Q |
109 |
tgcacttaaatcttcct |
125 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
39220680 |
tgcacttaaatcctcct |
39220664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 42926217 - 42926259
Alignment:
| Q |
246 |
acttgacaaaaacacttaaaataatttttctctctcattcatt |
288 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
42926217 |
acttaacaaaaacacttaaaatcatttttctctttcattcatt |
42926259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 40019842 - 40019882
Alignment:
| Q |
246 |
acttgacaaaaacacttaaaataatttttctctctcattca |
286 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||||||||||| |
|
|
| T |
40019842 |
acttgacaagagcacttaaaacaatttttctctctcattca |
40019882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 52585893 - 52586130
Alignment:
| Q |
9 |
aaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatat |
108 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| | |||||||||||| |||||||||| |||||||||||||| ||||||||| |||||||| |
|
|
| T |
52585893 |
aaccattcagtttttgccaaaacaaaagtgtctgtatcatctcttatacaaactcttattcccactctattagaaagctgggagaaagaagcatcaatat |
52585992 |
T |
|
| Q |
109 |
tgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgcca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
52585993 |
tgcacttaaatcttccttcagctggtttgatccatttcacatttccttcttgtcgcggatgtgcacaagatgtattacaaatcctacgtgcatcttacca |
52586092 |
T |
|
| Q |
209 |
atcgtgaagcataacttttgctctctcgacactataaa |
246 |
Q |
| |
|
||| | || |||||||||||||||||||||| |||||| |
|
|
| T |
52586093 |
atcatcaatcataacttttgctctctcgacaatataaa |
52586130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 20685252 - 20685014
Alignment:
| Q |
13 |
attcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatattgca |
112 |
Q |
| |
|
|||||||||| ||| |||||||| || |||| || || ||||||||||| ||||||||||| |||||||||| || ||||||||| |||||||||||| |
|
|
| T |
20685252 |
attcagtttttgccgaaacaaaagtgaatgtaacatcccttatacaaactgctattcccactctattagaaagttgtaagaaagaaacatcaatattgca |
20685153 |
T |
|
| Q |
113 |
cttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgccaatcg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
20685152 |
cttaaatcttccttcagctggtttgatccatttcacatttccttcttgttgcgactgtgcacaaaatgtattacgaaacctacgtgcatcttgccaatca |
20685053 |
T |
|
| Q |
213 |
tgaagcataacttttgctctctcgacactataaacttga |
251 |
Q |
| |
|
||||||||| |||||||||||| ||| |||||||||| |
|
|
| T |
20685052 |
tgaagcatagtttttgctctctccacaacataaacttga |
20685014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 53581137 - 53580898
Alignment:
| Q |
9 |
aaccattcagttttggccaaaacaaaaatgtctgtatcaaccat-tatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaata |
107 |
Q |
| |
|
|||||||||||||| |||||||||||| || ||||||| || | |||||||||||||||||||||| |||||| || ||||||||| ||||||| |
|
|
| T |
53581137 |
aaccattcagtttttgccaaaacaaaagtgcatgtatcatccttatatacaaactcctattcccactctattagg----tgtgagaaagaagcatcaata |
53581042 |
T |
|
| Q |
108 |
ttgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgcc |
207 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||| |||| |||| ||| ||||||||||| | | || ||||||||||||||||| |
|
|
| T |
53581041 |
ttgcacttaaatcttccttgagctggtttgacccatttcacatttccttcttgtcgcggctgtacacaagatgtaatgcgaaacctacgtgcatcttgcc |
53580942 |
T |
|
| Q |
208 |
aatcgtgaagcataacttttgctctctcgacactataaacttga |
251 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
53580941 |
aatcatgaagcatagcttttgctctctccacaacataaacttga |
53580898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 8726738 - 8726523
Alignment:
| Q |
9 |
aaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatat |
108 |
Q |
| |
|
||||||||| |||| |||||||| ||| || | ||||| || |||||||||||| |||||||| ||||||| |||| || |||||| |||||||||| | |
|
|
| T |
8726738 |
aaccattcattttttgccaaaacgaaagtgcatatatcatcccttatacaaactcatattcccattttattaaaaagttgaaagaaataagtatcaattt |
8726639 |
T |
|
| Q |
109 |
tgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgcca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| | || |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8726638 |
tgcacttaaatcttccttcagctggtttgatctatttcacatttcct--tatca-tggttgtgcacgagatgtattacaaatcctacgtgcatcttgcca |
8726542 |
T |
|
| Q |
209 |
atcgtgaagcataactttt |
227 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
8726541 |
gtcatgaagcataactttt |
8726523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 9078625 - 9078410
Alignment:
| Q |
9 |
aaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatat |
108 |
Q |
| |
|
||||||||| |||| |||||||| ||| || | ||||| || |||||||||||| |||||||| ||||||| |||| || |||||| |||||||||| | |
|
|
| T |
9078625 |
aaccattcattttttgccaaaacgaaagtgcatatatcatcccttatacaaactcatattcccattttattaaaaagttgaaagaaataagtatcaattt |
9078526 |
T |
|
| Q |
109 |
tgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgcca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| | || |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9078525 |
tgcacttaaatcttccttcagctggtttgatctatttcacatttcct--tatca-tggttgtgcacgagatgtattacaaatcctacgtgcatcttgcca |
9078429 |
T |
|
| Q |
209 |
atcgtgaagcataactttt |
227 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
9078428 |
gtcatgaagcataactttt |
9078410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 4136203 - 4136022
Alignment:
| Q |
41 |
tgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatattgcacttaaatcttccttcagctggtttgatc |
140 |
Q |
| |
|
||||||| || |||||||||||| ||| |||||| |||||||||||| | |||||||| |||||||||| ||||||||||||||||||||| ||||| || |
|
|
| T |
4136203 |
tgtatcatcccttatacaaactcttatacccactctattagaaagctaggagaaagaaatatcaatattacacttaaatcttccttcagcttgtttggtc |
4136104 |
T |
|
| Q |
141 |
catttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgccaatcgtgaagcataa |
222 |
Q |
| |
|
||||||||||||||| |||| ||| |||| ||||||| ||||||||||| |||| |||||||||||||| |||| ||||| |
|
|
| T |
4136103 |
catttcacatttccttcttgtcacggctgtggacaagatatattacaaatcttacgagcatcttgccaatcatgaaacataa |
4136022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 17237709 - 17237935
Alignment:
| Q |
9 |
aaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatat |
108 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| || |||||||||||| |||||||||| |||||||||||| | ||||||||| | |||||| |
|
|
| T |
17237709 |
aaccattcagtttttgccaaaacaaaagtgtctgtatcatcccttatacaaactcatattcccactctattagaaagctaggagaaagaagcaacaatat |
17237808 |
T |
|
| Q |
109 |
tgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgcca |
208 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||| | || |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17237809 |
tgcatttaaatcttccttcagctggtttgatccatttcacatttccttcttgtcgtggatgtgcacaagatgtattacaaatcctacgtgcatcttgtca |
17237908 |
T |
|
| Q |
209 |
atcgtgaagcataacttttgctctctc |
235 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
17237909 |
atcatgaagcataacttttgctctctc |
17237935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 32296125 - 32296333
Alignment:
| Q |
9 |
aaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatat |
108 |
Q |
| |
|
|||||||||||||| ||||||| |||| || || || ||||||||||||||||||||||| || ||||||||| || ||||||||| |||||||| |
|
|
| T |
32296125 |
aaccattcagtttttgccaaaataaaagtgcct----catccattatacaaactcctattccccctctattagaaaattgttagaaagaagcatcaatat |
32296220 |
T |
|
| Q |
109 |
tgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgcca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||| |||| | ||||||||||||||||| || |||| ||||||||||||| |
|
|
| T |
32296221 |
tgcacttaaatcttccttcagctggtttgatccatttcacattttcatcttgtcgcggctatgcacaagatgtattacgaaacctatgtgcatcttgcca |
32296320 |
T |
|
| Q |
209 |
atcgtgaagcata |
221 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
32296321 |
atcatgaagcata |
32296333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 20174423 - 20174318
Alignment:
| Q |
24 |
gccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaag---ctggaagaaagaagtatcaatattgcacttaaatc |
120 |
Q |
| |
|
|||||||||||| ||| ||||||| || |||||||||||| ||||||| ||||||||||||| || |||||||||| || |||||||||||||||| |
|
|
| T |
20174423 |
gccaaaacaaaagtgtatgtatcatcccttatacaaactcttattcccgctttattagaaagttactagaagaaagaaacattaatattgcacttaaatt |
20174324 |
T |
|
| Q |
121 |
ttcctt |
126 |
Q |
| |
|
|||||| |
|
|
| T |
20174323 |
ttcctt |
20174318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 41594872 - 41594832
Alignment:
| Q |
246 |
acttgacaaaaacacttaaaataatttttctctctcattca |
286 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
41594872 |
acttgacaaaaacatttaaaattatttttctctctcattca |
41594832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 10260280 - 10260041
Alignment:
| Q |
9 |
aaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatat |
108 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||| || ||||||||||||||||||||||| || ||||||| | | ||||||||| |||||||| |
|
|
| T |
10260280 |
aaccattcagtttttaccaaaacaaaagtgcatgtatcatcccttatacaaactcctattcccactctagtagaaagttaggagaaagaagcatcaatat |
10260181 |
T |
|
| Q |
109 |
tgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgcca |
208 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10260180 |
tggacttaaatcttccttcagctggtttgatcaatttcacatttccttcttgtcgcggttgtgcacaagatgtattacaaatcctacgtgcatcttgcca |
10260081 |
T |
|
| Q |
209 |
atcgtgaagcataacttttgctctctcgacactataaact |
248 |
Q |
| |
|
||| | ||||||||||||||||||||||||| ||||||| |
|
|
| T |
10260080 |
atcataaagcataacttttgctctctcgacaacataaact |
10260041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 9605189 - 9605400
Alignment:
| Q |
24 |
gccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatattgcacttaaatcttc |
123 |
Q |
| |
|
|||||||||||| ||| ||||||| || |||||||||||| |||||||||| || || |||| ||| ||||||| ||||||||||||||||||| ||| |
|
|
| T |
9605189 |
gccaaaacaaaagtgtttgtatcatcccttatacaaactcttattcccactctaataaaaagttgggagaaagagtcatcaatattgcacttaaatattc |
9605288 |
T |
|
| Q |
124 |
cttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgccaatcgtgaagcataac |
223 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||| |||||||||||||||||||||| |||||||||| ||||||||||||| |||| |||| | |
|
|
| T |
9605289 |
tttcagctggtttgatcaatttcacattttcttcttgtcccggttgtgcacaagatgtattataaatcctacgaacatcttgccaatcatgaatcatagc |
9605388 |
T |
|
| Q |
224 |
ttttgctctctc |
235 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9605389 |
ttttgctctctc |
9605400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 16912601 - 16912732
Alignment:
| Q |
104 |
aatattgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatct |
203 |
Q |
| |
|
||||||||||||||||||| ||| ||||| |||||||||||||||||||||| |||| |||| ||||||||| | |||||||||||||||| ||||| | |
|
|
| T |
16912601 |
aatattgcacttaaatctttcttaagctgatttgatccatttcacatttccttcttgttgcggatgtgcacaaaacgtattacaaatcctacatgcattt |
16912700 |
T |
|
| Q |
204 |
tgccaatcgtgaagcataacttttgctctctc |
235 |
Q |
| |
|
|| ||||| ||||||||| ||||||||||||| |
|
|
| T |
16912701 |
tgtcaatcatgaagcatagcttttgctctctc |
16912732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 17834555 - 17834659
Alignment:
| Q |
135 |
ttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgccaatcgtgaagcataacttttgctctct |
234 |
Q |
| |
|
|||||| |||||||||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
17834555 |
ttgatcaatttcacatttccttcttgtcgcggatgtgcacaagatgtattacaaatcctatgtgcatcttgccaatcatgaagcataacttttactctct |
17834654 |
T |
|
| Q |
235 |
cgaca |
239 |
Q |
| |
|
||||| |
|
|
| T |
17834655 |
cgaca |
17834659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 251
Target Start/End: Complemental strand, 8783294 - 8783142
Alignment:
| Q |
101 |
atcaatattgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaaga--tgtattacaaatcctacgtg |
198 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||| || ||||| |||||| ||||||||||||| ||| || |
|
|
| T |
8783294 |
atcaatattgcacttaaatctctcttcaactggtttgatccatttcacaattccttcttcttgcaattgtgtacaagatgtgtattacaaatcgtacatg |
8783195 |
T |
|
| Q |
199 |
catcttgccaatcgtgaagcataacttttgctctctcgacactataaacttga |
251 |
Q |
| |
|
|||||||||| || ||||||||| ||||| ||||||| ||| |||||||||| |
|
|
| T |
8783194 |
catcttgccattcatgaagcatagctttttctctctccacaacataaacttga |
8783142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 48026360 - 48026597
Alignment:
| Q |
2 |
tgaagttaaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagta |
101 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||| || ||||||| || |||||||||||||||||| |||| |||||||||||||| ||||||||| | |
|
|
| T |
48026360 |
tgaagtaaaccattcagtttttgccaaaacaaaagtgcatgtatcatcccttatacaaactcctattctcactctattagaaagctgggagaaagaagca |
48026459 |
T |
|
| Q |
102 |
tcaatattgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || | ||| |||||||||||||||||||||||||||||| |
|
|
| T |
48026460 |
tcaatattgcacttaaatcttccttcagctggtttgatccatttcacatttccttcttgtcgccgatgtccacaagatgtattacaaatcctacgtgcat |
48026559 |
T |
|
| Q |
202 |
cttgccaatcgtgaagcataacttttgctctctcgaca |
239 |
Q |
| |
|
|||| ||||| || | |||||||| ||||||||||||| |
|
|
| T |
48026560 |
cttgtcaatcatggaccataacttatgctctctcgaca |
48026597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 26 - 248
Target Start/End: Complemental strand, 5848967 - 5848745
Alignment:
| Q |
26 |
caaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatattgcacttaaatcttcct |
125 |
Q |
| |
|
|||||||||| || ||||||| | ||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5848967 |
caaaacaaaagtgcatgtatcatctcttatacaaactcctattcccactctattagaaagctgggagaaagaagcatcaatattgcacttaaatcttcct |
5848868 |
T |
|
| Q |
126 |
tcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgccaatcgtgaagcataactt |
225 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
5848867 |
tcagctagtttgatccatttcacatttccttcttgtcgcaaatgtgcacaagatgtattacaaatcctatgtgcatcttgccaatcatgaagcataactt |
5848768 |
T |
|
| Q |
226 |
ttgctctctcgacactataaact |
248 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
5848767 |
ttgctctctcgacaacataaact |
5848745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 9 - 228
Target Start/End: Original strand, 18579785 - 18580005
Alignment:
| Q |
9 |
aaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatat |
108 |
Q |
| |
|
|||||||||||||| |||||||||||| || |||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| |
|
|
| T |
18579785 |
aaccattcagtttttgccaaaacaaaagtgcctgtatcatcccttatacaaactcctattcccactctattagaaagctgggagaaagaagcatcaatat |
18579884 |
T |
|
| Q |
109 |
tgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtat-tacaaatcctacgtgcatcttgcc |
207 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||| |||| ||| |||| ||||||||||| ||| || ||||||||||||||||| |
|
|
| T |
18579885 |
tgcatttaaatcttcctttcgctggtttgatccatttcacatttccttcttgtcgcgactgtgaacaagatgtatatacgaaacctacgtgcatcttgcc |
18579984 |
T |
|
| Q |
208 |
aatcgtgaagcataacttttg |
228 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
18579985 |
aatcatgaagcataacttttg |
18580005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 15745826 - 15746050
Alignment:
| Q |
11 |
ccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatattg |
110 |
Q |
| |
|
|||||||||||| ||||||||||| | |||||||| | ||||||| ||||||||||||||| ||||||||||| ||||| ||| |||||||||| |
|
|
| T |
15745826 |
ccattcagtttttaccaaaacaaaagtacctgtatcatctcttatacagactcctattcccactctattagaaagcatagagaaaaaagcatcaatattg |
15745925 |
T |
|
| Q |
111 |
cacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgccaat |
210 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||| |||| || ||||||||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
15745926 |
cacttaaatctcccttcaactggtttgatccatttcacatttccttcttgtcgcaactgtgcacaagaagtattacgaaacctacgtgcatcttgccaag |
15746025 |
T |
|
| Q |
211 |
cgtgaagcataacttttgctctctc |
235 |
Q |
| |
|
| |||| |||| |||||||||||| |
|
|
| T |
15746026 |
catgaaacatagtttttgctctctc |
15746050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 33171164 - 33171388
Alignment:
| Q |
9 |
aaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatat |
108 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| ||| || || ||||||||||||||||| ||||| |||||||||| ||| |||||||| |||||||| |
|
|
| T |
33171164 |
aaccattcagttttagccaaaacaaaagtgtatgt--catcccttatacaaactcctattaccactctattagaaagatgggagaaagaaacatcaatat |
33171261 |
T |
|
| Q |
109 |
tgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgcca |
208 |
Q |
| |
|
|| |||||||| || ||| || ||||||||| | ||||| || | | |||| |||||| |||||||| ||||||| |||||||| | |||||||| || |
|
|
| T |
33171262 |
tgtacttaaatatttctttagttggtttgattcgtttcaaatattcgtcttgtcgcggttatgcacaagttgtattataaatcctatgagcatcttgtca |
33171361 |
T |
|
| Q |
209 |
atcgtgaagcataacttttgctctctc |
235 |
Q |
| |
|
| | |||| |||| |||| ||||||| |
|
|
| T |
33171362 |
accatgaaacatagtttttactctctc |
33171388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 124 - 235
Target Start/End: Original strand, 40492515 - 40492626
Alignment:
| Q |
124 |
cttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgccaatcgtgaagcataac |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||| |||||||||| ||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
40492515 |
cttcagctggtttgatccatttcacatttccttcttgtcacggatgtgcacaaggtgtattacaaatcctacgtgcatcttgccaatcattaagcataat |
40492614 |
T |
|
| Q |
224 |
ttttgctctctc |
235 |
Q |
| |
|
||| ||||||| |
|
|
| T |
40492615 |
tttctctctctc |
40492626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 125 - 235
Target Start/End: Complemental strand, 19051366 - 19051256
Alignment:
| Q |
125 |
ttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgccaatcgtgaagcataact |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| || || | |||||||||||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
19051366 |
ttcagctggtttgatccatttcacatttccttcttgtcacgactgcgaacaagatgtattacaaatcctacgagcatcttgtcaatcatgaagcataact |
19051267 |
T |
|
| Q |
225 |
tttgctctctc |
235 |
Q |
| |
|
||||||||||| |
|
|
| T |
19051266 |
tttgctctctc |
19051256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 36098638 - 36098453
Alignment:
| Q |
25 |
ccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatattgcacttaaatcttcc |
124 |
Q |
| |
|
||||||||||||||| ||||||| | |||| |||||||||||||| ||| |||||| | | | ||||| || || ||||||||||||||||| ||| |
|
|
| T |
36098638 |
ccaaaacaaaaatgtgtgtatcatctcttatgcaaactcctattccaactctattagtatattaggagaaaaaaacattaatattgcacttaaatcatcc |
36098539 |
T |
|
| Q |
125 |
ttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgccaatc |
211 |
Q |
| |
|
|||| |||||| |||||||||||| | | | ||| ||| || ||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
36098538 |
ttcacttggtttaatccatttcacactac-tgtttgtcgcgactgcacacaaagtatattacaaatcctacgtgcatcttgccaatc |
36098453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 251
Target Start/End: Complemental strand, 5509872 - 5509729
Alignment:
| Q |
104 |
aatattgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttg-cagcggttgtgcacaagatgtattacaaatcctacgtgcatc |
202 |
Q |
| |
|
||||||||| |||||||||| ||||||| |||| ||||||||||||||| || |||| ||| |||| ||| |||||| ||||||||||| | ||| |
|
|
| T |
5509872 |
aatattgcatttaaatcttctttcagctagttttatccatttcacattttcttcttgtcag-agttg----caatatgtatcacaaatcctacctatatc |
5509778 |
T |
|
| Q |
203 |
ttgccaatcgtgaagcataacttttgctctctcgacactataaacttga |
251 |
Q |
| |
|
|||||||| |||| |||| |||||||||||| ||| |||||||||| |
|
|
| T |
5509777 |
ttgccaattctgaaacatagtttttgctctctcaacaacataaacttga |
5509729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 19051421 - 19051364
Alignment:
| Q |
12 |
cattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattc |
69 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| | || |||||||||||| ||||| |
|
|
| T |
19051421 |
cattcagttttttccaaaacaaaattgtctgtattatcctttatacaaactcatattc |
19051364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 48859291 - 48859052
Alignment:
| Q |
12 |
cattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatattgc |
111 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| || |||||||||||| ||||| |||| |||||||||| ||| ||||||||| ||||||||||| |
|
|
| T |
48859291 |
cattcagtttttgccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcatcaatattgc |
48859192 |
T |
|
| Q |
112 |
acttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgccaatc |
211 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
48859191 |
acttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatcatgccaatc |
48859092 |
T |
|
| Q |
212 |
gtgaagcataacttttgctctctcgacactataaacttga |
251 |
Q |
| |
|
|||||||||| |||| ||||||| ||| |||||||||| |
|
|
| T |
48859091 |
atgaagcataatttttcctctctcaacaacataaacttga |
48859052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 23040323 - 23040549
Alignment:
| Q |
9 |
aaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatat |
108 |
Q |
| |
|
|||||||||||||| ||||||| |||| || |||||||| || ||||||| ||||||||||||||| |||||||||||| ||||||||| |||||||| |
|
|
| T |
23040323 |
aaccattcagtttttgccaaaataaaagtgcctgtatcatcctttatacagactcctattcccactctattagaaagctatgagaaagaagcatcaatat |
23040422 |
T |
|
| Q |
109 |
tgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgcca |
208 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| ||||||||||||||| |||| |||| ||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
23040423 |
tgcactaaaatcttccttgagctggtttgattcatttcacatttccttcttgtcgcggatgtgcacaagatgtattacgaaacctacgtgcatcttgcca |
23040522 |
T |
|
| Q |
209 |
atcgtgaagcataacttttgctctctc |
235 |
Q |
| |
|
||| ||||| ||||||||||||||||| |
|
|
| T |
23040523 |
atcatgaaggataacttttgctctctc |
23040549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 13596768 - 13596533
Alignment:
| Q |
9 |
aaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatat |
108 |
Q |
| |
|
|||||||||||||| |||||||||||| || || || | ||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||| |
|
|
| T |
13596768 |
aaccattcagtttttgccaaaacaaaattgcct----catctcttatacaaacttctattcccactctattagaaagctgggagaaagaagcatcaatat |
13596673 |
T |
|
| Q |
109 |
tgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgcca |
208 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13596672 |
tgcacttaaatcttcctttaactggcttgatccatttcacatttccttcttgtcgcaactgtgcacaagatgtattacaaatcctacatgcatcttgcca |
13596573 |
T |
|
| Q |
209 |
atcgtgaagcataacttttgctctctcgacactataaact |
248 |
Q |
| |
|
||| ||||||||||| ||| ||||||| ||| ||||||| |
|
|
| T |
13596572 |
atcatgaagcataacattttctctctcaacaacataaact |
13596533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 22911022 - 22910799
Alignment:
| Q |
11 |
ccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatattg |
110 |
Q |
| |
|
||||| |||||| |||||||||||| | ||||||| || ||||||| ||||||||||||||| |||||||||| || |||| |||| |||||||||| |
|
|
| T |
22911022 |
ccatttagtttttgccaaaacaaaagtacatgtatcatcccttatacagactcctattcccactatattagaaagttgtgagaatgaagcatcaatattg |
22910923 |
T |
|
| Q |
111 |
cacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgccaat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||| || |||||||||||||||||||| |
|
|
| T |
22910922 |
cacttaaatcttccttcagctggtttgatccatttcacatttccttcttg-tccggatgtgcacaagaagtattacgaaacctacgtgcatcttgccaat |
22910824 |
T |
|
| Q |
211 |
cgtgaagcataacttttgctctctc |
235 |
Q |
| |
|
| ||||||||| |||||||||||| |
|
|
| T |
22910823 |
catgaagcatagtttttgctctctc |
22910799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 57 - 251
Target Start/End: Complemental strand, 26754687 - 26754493
Alignment:
| Q |
57 |
caaactcctattcccactttattagaaagctggaagaaagaagtatcaatattgcacttaaatcttccttcagctggtttgatccatttcacatttcctc |
156 |
Q |
| |
|
||||||||||||| |||| ||||| |||| | ||||||||| |||||||||| ||||||||||||||||| ||||||||| |||||||| |||| | |
|
|
| T |
26754687 |
caaactcctattctcactctattataaagttatgagaaagaagcatcaatattgtacttaaatcttccttcacatggtttgattcatttcacgtttcttt |
26754588 |
T |
|
| Q |
157 |
cttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgccaatcgtgaagcataacttttgctctctcgacactataaacttga |
251 |
Q |
| |
|
|||| ||| |||||||| ||| || ||||||||||||||||||||||| ||||| |||||| |||||||||||||||| ||| |||||||||| |
|
|
| T |
26754587 |
cttgtcgcgattgtgcacgagacgtgttacaaatcctacgtgcatcttgtcaatcatgaagcgtaacttttgctctctccacaacataaacttga |
26754493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 35912297 - 35912394
Alignment:
| Q |
27 |
aaaacaaaaatgtctgtatcaaccattatacaaactcctattcccactttattagaaagctggaagaaagaagtatcaatattgcacttaaatcttcc |
124 |
Q |
| |
|
||||||||||||| || |||| | ||||||||||||||||| || ||||| ||| | | || |||||||| ||||||||| |||| ||||||||| |
|
|
| T |
35912297 |
aaaacaaaaatgtatggatcatcaattatacaaactcctatgccaactttgatagtatgttgaaagaaagacacatcaatattacactgaaatcttcc |
35912394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 126 - 251
Target Start/End: Complemental strand, 15609890 - 15609765
Alignment:
| Q |
126 |
tcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatcctacgtgcatcttgccaatcgtgaagcataactt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
15609890 |
tcagctggtttgatccatttcacatttccttcttgtcgcggttgtgcacaagatgtattaaaaatccaacgtgcatcttgccaatcatgaagcataactt |
15609791 |
T |
|
| Q |
226 |
ttgctctctcgacactataaacttga |
251 |
Q |
| |
|
|| ||||||||||| |||||||||| |
|
|
| T |
15609790 |
ttactctctcgacaacataaacttga |
15609765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 5827420 - 5827361
Alignment:
| Q |
9 |
aaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctatt |
68 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| || ||||||| ||||||||| |
|
|
| T |
5827420 |
aaccattcagtttttgccaaaacaaaagtgtctgtatcatcccttatacagactcctatt |
5827361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 15609957 - 15609895
Alignment:
| Q |
12 |
cattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccact |
74 |
Q |
| |
|
||||||||||| |||||||||||| || ||||||| || |||||||||||| |||||||||| |
|
|
| T |
15609957 |
cattcagtttttgccaaaacaaaagtgcatgtatcatcccttatacaaactcatattcccact |
15609895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0913 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0913
Description:
Target: scaffold0913; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 3329 - 3238
Alignment:
| Q |
103 |
caatattgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatccta |
194 |
Q |
| |
|
|||| |||||| ||||||||| || || ||||||||||||||||||||||||| |||| |||| || | |||||||||||||||||||||| |
|
|
| T |
3329 |
caatcttgcacataaatcttcgtttagttggtttgatccatttcacatttccttcttgtcgcggctgcgtacaagatgtattacaaatccta |
3238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0913; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 3393 - 3329
Alignment:
| Q |
9 |
aaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccac |
73 |
Q |
| |
|
||||||| |||||| |||||||||||| ||| ||||||| || |||||||||||| |||| |||| |
|
|
| T |
3393 |
aaccatttagtttttgccaaaacaaaagtgtatgtatcatcccttatacaaactcttatttccac |
3329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0898 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0898
Description:
Target: scaffold0898; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 2272 - 2363
Alignment:
| Q |
103 |
caatattgcacttaaatcttccttcagctggtttgatccatttcacatttcctccttgcagcggttgtgcacaagatgtattacaaatccta |
194 |
Q |
| |
|
|||| |||||| ||||||||| || || ||||||||||||||||||||||||| |||| |||| || | |||||||||||||||||||||| |
|
|
| T |
2272 |
caatcttgcacataaatcttcgtttagttggtttgatccatttcacatttccttcttgtcgcggctgcgtacaagatgtattacaaatccta |
2363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0898; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 2208 - 2272
Alignment:
| Q |
9 |
aaccattcagttttggccaaaacaaaaatgtctgtatcaaccattatacaaactcctattcccac |
73 |
Q |
| |
|
||||||| |||||| |||||||||||| ||| ||||||| || |||||||||||| |||| |||| |
|
|
| T |
2208 |
aaccatttagtttttgccaaaacaaaagtgtatgtatcatcccttatacaaactcttatttccac |
2272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 8947 - 8983
Alignment:
| Q |
244 |
aaacttgacaaaaacacttaaaataatttttctctct |
280 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
8947 |
aaacttaacaaaaacacttaaaattatttttctctct |
8983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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