View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_high_35 (Length: 362)
Name: NF1783_high_35
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 31557705 - 31557637
Alignment:
| Q |
1 |
tattttggccatttaacttgcaaatactagatattttgattaggttacaagctttagacattttagtca |
69 |
Q |
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| T |
31557705 |
tattttggtcaattaacttaaaaatactagatactttgattaagttacaaactttagacattttagtca |
31557637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 18138336 - 18138252
Alignment:
| Q |
44 |
gttacaagctttagacattttagtcatttctattaaaaataaaaatgtcttaataacttataatctaagagactgaactgttcaac |
129 |
Q |
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| T |
18138336 |
gttacaaactttagacattttagtcatttctattaagaatctaaatgt-tttatcatttgtaatctaagagacggaagtgttcaac |
18138252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 13526002 - 13526081
Alignment:
| Q |
21 |
caaatactagatattttgatt--aggttacaagctttagacattttagtcatttctattaaaaataaaaatgtcttaata |
98 |
Q |
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| T |
13526002 |
caaatactagatattttgattttaagttacaaactttagacattttaatctatcctattaaaaattgaaatgtcttaata |
13526081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 354
Target Start/End: Complemental strand, 7839110 - 7839081
Alignment:
| Q |
325 |
gcaaatcaagcgccccccgttgagtattat |
354 |
Q |
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| T |
7839110 |
gcaaatcaagcgccccccgttgagtattat |
7839081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 7839239 - 7839206
Alignment:
| Q |
197 |
gactttagagatcaaaatcagatctaacaataac |
230 |
Q |
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| T |
7839239 |
gacttttgagatcaaaatcagatctaacaataac |
7839206 |
T |
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