View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_high_42 (Length: 338)
Name: NF1783_high_42
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 37218611 - 37218342
Alignment:
| Q |
11 |
cattttgatcatgactgcaaataatttgatgaccactgcaaatattagagataaattgtagatccgtatatataacataatatagaatggaatgagatgg |
110 |
Q |
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| T |
37218611 |
cattttgatcatgactgcaaataatttgatgaccactgcaaatattagagataaattgtagatccgtatatataacataatatagaatggaatgagatgg |
37218512 |
T |
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| Q |
111 |
aatatattttgaactcttactccttt-gtggtgtccattcttttctttgaagtttagcactctggaaagttatcaatgcaaaaccattaactgtatgaag |
209 |
Q |
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| T |
37218511 |
aatatattttgaactcttactccttttgtggtgtccattcttttctttgaagtttagcactccggaaagttatcaatgcaaaaccattaactgtatgaag |
37218412 |
T |
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| Q |
210 |
ggtgtttatgaaatgaaaaataagcttaattggtataggatttttggaggtctctgcagtgttgaccttc |
279 |
Q |
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| T |
37218411 |
ggtgtttatgaaatgaaaaataagcttaattggtataggatttttggaggtctctgcagtgttgaccttc |
37218342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 5409520 - 5409411
Alignment:
| Q |
111 |
aatatattttgaactcttactcctttgtggtgtccattcttttctttgaagtttagcactctggaaagttatcaatgcaaaaccattaactgtatgaagg |
210 |
Q |
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| T |
5409520 |
aatatattttaaacacttactcctttgtggtgtccattcttttctttgaagtttagcactccagaaagttatcaatgcaaaatcaataattgtatgaagg |
5409421 |
T |
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| Q |
211 |
gtgtttatga |
220 |
Q |
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| T |
5409420 |
gtatttatga |
5409411 |
T |
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