View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_high_46 (Length: 330)
Name: NF1783_high_46
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 162 - 311
Target Start/End: Complemental strand, 25222973 - 25222823
Alignment:
| Q |
162 |
tcctcttaaatagctgtatcataaacttttaaggtgcacatttatttgataaaaa-gaaaattagtcccttctgcctttccaccctttttcctaacctca |
260 |
Q |
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|||||||||||||||||||||||||||| | | |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25222973 |
tcctcttaaatagctgtatcataaacttgtgacgtgcacatttatttgataaaaaagaaaattagtcccttctgcctctccaccctttttcctaacctca |
25222874 |
T |
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| Q |
261 |
tacaccctacacggtatcgcttcagaagcataatatattccaaggtgaaaa |
311 |
Q |
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| T |
25222873 |
ttcaccctacacagtatcgcatcagaagcataatatattccaagttgaaaa |
25222823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 162 - 311
Target Start/End: Complemental strand, 25287129 - 25286979
Alignment:
| Q |
162 |
tcctcttaaatagctgtatcataaacttttaaggtgcacatttatttgataaaaa-gaaaattagtcccttctgcctttccaccctttttcctaacctca |
260 |
Q |
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|||||||||||||||||||||||||||| | | |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25287129 |
tcctcttaaatagctgtatcataaacttgtgacgtgcacatttatttgataaaaaagaaaattagtcccttctgcctctccaccctttttcctaacctca |
25287030 |
T |
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| Q |
261 |
tacaccctacacggtatcgcttcagaagcataatatattccaaggtgaaaa |
311 |
Q |
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| T |
25287029 |
ttcaccctacacagtatcgcatcagaagcataatatattccaagttgaaaa |
25286979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 25223029 - 25222973
Alignment:
| Q |
73 |
atggatagtttgagagtttctgttagtgacattgatagcatgcaaattggtggtatt |
129 |
Q |
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| T |
25223029 |
atggatagtttgagattttctgttagtgacattgatagcatgcaaaatagtggtatt |
25222973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 25287185 - 25287129
Alignment:
| Q |
73 |
atggatagtttgagagtttctgttagtgacattgatagcatgcaaattggtggtatt |
129 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |
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| T |
25287185 |
atggatagtttgagattttctgttagtgacattgatagcatgcaaaatagtggtatt |
25287129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 25223529 - 25223489
Alignment:
| Q |
22 |
taaatattaagggacttttaacaagtatttgaaaataagag |
62 |
Q |
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| T |
25223529 |
taaatattaagggacttttaagaagtatttgaaaataagag |
25223489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 25287685 - 25287645
Alignment:
| Q |
22 |
taaatattaagggacttttaacaagtatttgaaaataagag |
62 |
Q |
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| T |
25287685 |
taaatattaagggacttttaagaagtatttgaaaataagag |
25287645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 37155201 - 37155269
Alignment:
| Q |
73 |
atggatagtttgagagtttctgttagtgacattgatagcatgcaaattggtggtattttagtctcacaa |
141 |
Q |
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|||||||||||| || ||||||||||| |||||||| || || ||| || ||||||||||| ||||||| |
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| T |
37155201 |
atggatagtttgggattttctgttagtaacattgatggcctgaaaaatgctggtattttagcctcacaa |
37155269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 37152660 - 37152701
Alignment:
| Q |
22 |
taaatattaagggacttttaacaagtatttgaaaataagagc |
63 |
Q |
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| T |
37152660 |
taaatattaagggacttttatgaagtattttaaaataagagc |
37152701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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