View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1783_high_51 (Length: 316)
Name: NF1783_high_51
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_high_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 39996896 - 39996603
Alignment:
| Q |
8 |
ccaagaatatacttttaccagcccccaaaaaactggcttccctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgt |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39996896 |
ccaacaatatacttttaccagcccccaaaaaactggcttacctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgt |
39996797 |
T |
|
| Q |
108 |
tttatccacttgccggtcgtttacactcgaaaggaaatggtcgttttgatcttgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39996796 |
tttatccacttgccggtcgtttacactcgaaaggaaatggtcgttttgatctcgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgtt |
39996697 |
T |
|
| Q |
208 |
aacattatccgaactaggtgacttttcaccttcttcagaatattaccgttaccttatcccacacattgattacacactcccaatggaagatatt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39996696 |
aacattatccgaactaggtgacttttcaccttcttcggaatattaccgttaccttatcccacacattgattacacactcccaatggaagatatt |
39996603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 53036708 - 53036988
Alignment:
| Q |
17 |
tacttttaccagcccccaaaaaactggcttccctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgttttatccac |
116 |
Q |
| |
|
|||||||||| |||||| |||| |||||| ||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
53036708 |
tacttttaccgccccccacaaaaatggcttacctcccccaataaaatcgccaccactttgaaagactcattgagcaaagtccttgtgccgttttatccac |
53036807 |
T |
|
| Q |
117 |
ttgccggtcgtttacactcgaaaggaaatggtcgttttgatcttgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgttaacattatc |
216 |
Q |
| |
|
| |||||||||||||| | ||||| || |||||||||||| | ||||||||||||||||||| |||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
53036808 |
tagccggtcgtttacaatggaaagaaagcggtcgttttgatgtcgaatgcaactcattgggtgctcaattcatcgaagcagaatcgtcgttaaccttatc |
53036907 |
T |
|
| Q |
217 |
cgaactaggtgacttttcaccttcttcagaatattaccgttaccttatcccacacattgattacacactcccaatggaaga |
297 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | |||||||||||| ||||| |||||||||| |||||| ||||| |
|
|
| T |
53036908 |
cgaactaggtgacttttcaccttcttgtgaatattatccttaccttatcccgcacatcgattacacacgcccaattgaaga |
53036988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University