View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_high_52 (Length: 305)
Name: NF1783_high_52
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_high_52 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 24 - 305
Target Start/End: Original strand, 3522813 - 3523090
Alignment:
| Q |
24 |
aacattaccaacactttccaccttgaggagacctcaaaagaggcttaaaaaattcacagttgaaaccattcgggcctgaacttttgtttcctttggaatt |
123 |
Q |
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| T |
3522813 |
aacattaccaacactttccaccttgaggagacctcaaaaaaggcttaaaaaattcacagttgaaaccattcgggcctgaacttttgtttcctttggaatt |
3522912 |
T |
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| Q |
124 |
atatatggactaccttgaagatttcctcgtccaagannnnnnngaaagaagagtattttgaacctcattcaaagaagcaaagattactatgtcaaaagta |
223 |
Q |
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| T |
3522913 |
at----ggactaccttgatgatttcctcctccaagatttttttgaaagaagagtattttgaacctcattcaaagaagcaaagactactatgtcaaaagta |
3523008 |
T |
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| Q |
224 |
ggtatttctcagttgacataagagaaaggtttagaaaaatacatgaagacctcttgtcttatagtcgatggaagatgaagtc |
305 |
Q |
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| T |
3523009 |
ggtatttctcagttgacataagagaaaggtttagaaaaatacatgaagacctcttgtcttatagtcgatgaaagatgaagtc |
3523090 |
T |
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