View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1783_high_58 (Length: 286)
Name: NF1783_high_58
Description: NF1783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1783_high_58 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 22110435 - 22110160
Alignment:
| Q |
8 |
agcaattgagattccttttccatcaggcttgcttttagttcttcaataccagctatagctttcctcagttcctcatataattcagcctctctcccactgg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22110435 |
agcaattgagattccttttccatcaggcttgcttttagctcttcaataccagctatagctttcctcagttcctcatataattcagcctctctcccactgg |
22110336 |
T |
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| Q |
108 |
attctgattttgtatgttccagttgttcgtaagcacttctaatctgcaatgtgctctggatgtattcttcttggtatcttatctcggcaacatccaatgc |
207 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22110335 |
attctgattttctatgttccagttgttcgtaagcacttctaatctgcaatgtgctctggatgtattcttcttggtatcttatctcggcaacatccaatgc |
22110236 |
T |
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| Q |
208 |
agatttcaactgctctacttcagatttggcagagataagcgcggctttgagcccatttatctcctcattttcctga |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22110235 |
agatttcaactgctctacttcagatttggcagagataagcgcggctttgagcccatttatctcctcattttcctga |
22110160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 40584154 - 40584429
Alignment:
| Q |
8 |
agcaattgagattccttttccatcaggcttgcttttagttcttcaataccagctatagctttcctcagttcctcatataattcagcctctctcccactgg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40584154 |
agcaattgagattccttttccatcaggcttgcttttagctcttcaataccagctatagctttcctcagttcctcatataattcagcctctctcccactgg |
40584253 |
T |
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| Q |
108 |
attctgattttgtatgttccagttgttcgtaagcacttctaatctgcaatgtgctctggatgtattcttcttggtatcttatctcggcaacatccaatgc |
207 |
Q |
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| T |
40584254 |
attctgattttctatgttccagttgttcgtaagcacttctaatctgcaatgtgctctggatgtattcttcttggtatcttatctcggcaacatccaatgc |
40584353 |
T |
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| Q |
208 |
agatttcaactgctctacttcagatttggcagagataagcgcggctttgagcccatttatctcctcattttcctga |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40584354 |
agatttcaactgctctacttcagatttggcagagataagcgcggctttgagcccatttatctcctcattttcctga |
40584429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 140 - 273
Target Start/End: Complemental strand, 28733460 - 28733327
Alignment:
| Q |
140 |
gcacttctaatctgcaatgtgctctggatgtattcttcttggtatcttatctcggcaacatccaatgcagatttcaactgctctacttcagatttggcag |
239 |
Q |
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||||||||||||||||||||||| ||||| || || | || ||||||| ||||||| |||||| ||||||||| | |||| || |||||| ||| | | |
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| T |
28733460 |
gcacttctaatctgcaatgtgctttggatatactcattctgatatcttacctcggcaccatccagtgcagattttagctgccctgcttcagctttaactg |
28733361 |
T |
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| Q |
240 |
agataagcgcggctttgagcccatttatctcctc |
273 |
Q |
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| | |||| |||||||||||| ||||||||||| |
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| T |
28733360 |
aaacaagctcggctttgagccggtttatctcctc |
28733327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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